Mercurial > repos > mvdbeek > damidseq_findpeaks

comparison damidseq_findpeaks.xml @ 11:c851dab0d2d9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/damidseq_findpeaks commit 5bf4f4dbd82988d1612d951d69125bc5f5b439be-dirty
author mvdbeek
date Thu, 14 Jun 2018 09:08:32 -0400
parents 48d9c6f9ef41
children
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10:48d9c6f9ef41 11:c851dab0d2d9
18 cat peak_analysis*/*data >> log.txt 18 cat peak_analysis*/*data >> log.txt
19 ]]></command> 19 ]]></command>
20 <inputs> 20 <inputs>
21 <param name="input_file" type="data" format="gff,bed,bedgraph" label="Select dam-fusion/dam ratio files" help="You can use damidseq_core to produce this file."/> 21 <param name="input_file" type="data" format="gff,bed,bedgraph" label="Select dam-fusion/dam ratio files" help="You can use damidseq_core to produce this file."/>
22 <param argument="--fdr" type="float" min="0" max="1" value="0.01" label="Set the False Discovery Rate (FDR)"/> 22 <param argument="--fdr" type="float" min="0" max="1" value="0.01" label="Set the False Discovery Rate (FDR)"/>
23 <param argument="--frac" type="float" min="0" max="1" value="0" label="Number of random fragments to consider per iteration"/> 23 <param argument="--frac" type="integer" min="0" value="0" label="Number of random fragments to consider per iteration"/>
24 <param argument="--min_count" type="integer" min="1" value="2" label="Minimum number of fragments to consider as a peak"/> 24 <param argument="--min_count" type="integer" min="1" value="2" label="Minimum number of fragments to consider as a peak"/>
25 <param argument="--min_quant" type="float" min="0" max="1" value="0.95" label="Minimum quantile for considering peaks"/> 25 <param argument="--min_quant" type="float" min="0" max="1" value="0.95" label="Minimum quantile for considering peaks"/>
26 <param argument="--n" type="integer" min="1" value="100" label="Number of iterations"/> 26 <param argument="--n" type="integer" min="1" value="100" label="Number of iterations"/>
27 <param argument="--step" type="float" min="0" max="1" value="0.01" label="Stepping for quantiles"/> 27 <param argument="--step" type="float" min="0" max="1" value="0.01" label="Stepping for quantiles"/>
28 <param argument="--unified_peaks" type="select" label="Set the False Discovery Rate (FDR)"> 28 <param argument="--unified_peaks" type="select" label="Set the False Discovery Rate (FDR)">