Mercurial > repos > mvdbeek > damidseq_findpeaks

changeset 4:5a56b400df93 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/damidseq_findpeaks commit 11875bd02ef0c27b5efa25ba5e256c530117e80a-dirty
author mvdbeek
date Fri, 20 Apr 2018 05:07:19 -0400
parents 61d383c9047a
children 29f82a5c7966
files damidseq_findpeaks.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/damidseq_findpeaks.xml	Fri Apr 20 05:03:34 2018 -0400
+++ b/damidseq_findpeaks.xml	Fri Apr 20 05:07:19 2018 -0400
@@ -13,9 +13,9 @@
  --n=$n
  --step=$step
  --unified_peaks=$unified_peaks
- '$input_file' | LC_ALL=C sed -e 's/[^A-Za-z0-9._-]/ /g' && 
+ '$input_file' | LC_ALL=C sed -e 's/[^A-Za-z0-9._-]/ /g' 2>&1 > log.txt&& 
 mv peak_analysis*/*.gff peaks.gff &&
-mv peak_analysis*/*data log.txt
+cat peak_analysis*/*data >> log.txt
     ]]></command>
     <inputs>
         <param name="input_file" type="data" format="gff,bed,bedgraph" label="Select dam-fusion/dam ratio files" help="You can use damidseq_core to produce this file."/>