Mercurial > repos > mvdbeek > damidseq_polii_gene_call

view test-data/genes.gff @ 0:1b5bd3b955ed draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/damidseq_polII_gene_call commit 2e97fdaeafdafe2c63588de17777cd32a798adb1-dirty
author mvdbeek
date Fri, 20 Apr 2018 10:27:20 -0400
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2L	FlyBase	gene	54817	55767	.	+	.	ID=FBgn0267987;Name=CR46254;Ontology_term=SO:0000011,SO:0000087;Dbxref=FlyBase_Annotation_IDs:CR46254;derived_computed_cyto=21B1-21B1
2L	FlyBase	ncRNA	54817	55767	.	+	.	ID=FBtr0347585;Name=CR46254-RA;Parent=FBgn0267987;Dbxref=FlyBase_Annotation_IDs:CR46254-RA;score_text=Weakly Supported;score=0
2L	FlyBase	gene	65999	66242	.	+	.	ID=FBgn0266878;Name=CR45339;Ontology_term=SO:0000011,SO:0000087;Dbxref=FlyBase_Annotation_IDs:CR45339,EntrezGene:19834983,GenomeRNAi:19834983;derived_computed_cyto=21B1-21B1
2L	FlyBase	ncRNA	65999	66242	.	+	.	ID=FBtr0345732;Name=CR45339-RA;Parent=FBgn0266878;Dbxref=FlyBase_Annotation_IDs:CR45339-RA,REFSEQ:NR_123995;score_text=Weakly Supported;score=0
2L	FlyBase	gene	66318	66524	.	+	.	ID=FBgn0266879;Name=CR45340;Ontology_term=SO:0000011,SO:0000087;Dbxref=FlyBase_Annotation_IDs:CR45340,EntrezGene:19835538,GenomeRNAi:19835538;derived_computed_cyto=21B1-21B1
2L	FlyBase	ncRNA	66318	66524	.	+	.	ID=FBtr0345733;Name=CR45340-RA;Parent=FBgn0266879;Dbxref=FlyBase_Annotation_IDs:CR45340-RA,REFSEQ:NR_123996;score_text=Weakly Supported;score=0
2L	FlyBase	gene	66482	71390	.	+	.	ID=FBgn0067779;Name=dbr;fullname=debra;Alias=FBgn0028472,FBgn0043386,CG11371,Dbr,EP456,BcDNA:LD26519,EP0456,Debra;Ontology_term=SO:0000010,SO:0000087,GO:0005771,GO:0007616,GO:0005634,GO:0008270;Dbxref=FlyBase:FBan0011371,FlyBase_Annotation_IDs:CG11371,GB_protein:AAF51565,GB:AA942362,GB:AF184228,GB_protein:AAD55739,GB:AI109558,GB:AI402147,GB:AQ026007,GB:AQ073408,GB:AW942847,GB:AY047576,GB_protein:AAK77308,GB:CL527762,GB:CZ468654,GB:CZ470443,GB:CZ470758,GB:CZ471260,GB:CZ474676,GB:CZ474677,GB:CZ477845,GB:CZ482562,GB:CZ487746,UniProt/TrEMBL:Q9V474,INTERPRO:IPR012934,OrthoDB7_Drosophila:EOG79H5RG,GB_protein:AFH03489,GB_protein:AFH03487,GB_protein:AFH03486,GB_protein:AFH03488,EntrezGene:33161,UniProt/TrEMBL:Q961T5,BIOGRID:59424,FlyAtlas:CG11371-RB,InterologFinder:33161,GenomeRNAi:33161,INTERACTIVEFLY:/genebrief/debra.htm;gbunit=AE014134;derived_computed_cyto=21B1-21B1
2L	FlyBase	gene	71039	73836	.	-	.	ID=FBgn0266322;Name=CR44987;Ontology_term=SO:0000011,SO:0000087,SO:0000077;Dbxref=EntrezGene:19835103,FlyBase_Annotation_IDs:CR44987,GenomeRNAi:19835103;derived_computed_cyto=21B1-21B1
2L	FlyBase	ncRNA	71039	73836	.	-	.	ID=FBtr0344052;Name=CR44987-RA;Parent=FBgn0266322;Dbxref=REFSEQ:NR_123998,FlyBase_Annotation_IDs:CR44987-RA;score_text=Weakly Supported;score=0
2L	FlyBase	ncRNA	71039	73836	.	-	.	ID=FBtr0344053;Name=CR44987-RB;Parent=FBgn0266322;Dbxref=REFSEQ:NR_123997,FlyBase_Annotation_IDs:CR44987-RB;score_text=Weakly Supported;score=0
2L	FlyBase	gene	71757	76211	.	+	.	ID=FBgn0031213;Name=galectin;fullname=galectin;Alias=CG11372,Dmgal;Ontology_term=SO:0000010,SO:0000087,GO:0016936,GO:0005829,GO:0015143,GO:0008039,GO:0030246;Dbxref=FlyBase:FBan0011372,FlyBase_Annotation_IDs:CG11372,GB_protein:AAF51564,GB_protein:ACZ94130,GB_protein:ACZ94129,GB:AF338142,GB_protein:AAL87743,GB:AY071294,GB_protein:AAL48916,GB:BI236456,GB:CZ467438,GB:CZ467439,GB:CZ468006,GB:CZ481733,GB:CZ481734,GB:CZ485874,GB:CZ485875,UniProt/TrEMBL:Q9VPI6,INTERPRO:IPR001079,INTERPRO:IPR013320,GB_protein:AGB92325,UniProt/TrEMBL:C0PUZ0,UniProt/TrEMBL:M9NCX9,OrthoDB7_Drosophila:EOG7XQ9R2,OrthoDB7_Diptera:EOG76TN7W,GB_protein:AFH03490,EntrezGene:33162,UniProt/TrEMBL:E1JHP9,UniProt/TrEMBL:E1JHQ0,BDGP_clone:RE32514,OrthoDB7_Insecta:EOG76QSHF,OrthoDB7_Arthropoda:EOG7WTGG5,OrthoDB7_Metazoa:EOG7S7SFG,InterologFinder:33162,BIOGRID:59425,FlyAtlas:CG11372-RA,GenomeRNAi:33162;gbunit=AE014134;derived_computed_cyto=21B1-21B1
2L	FlyBase	gene	76348	77783	.	+	.	ID=FBgn0031214;Name=CG11374;Ontology_term=SO:0000010,SO:0000087,GO:0016936,GO:0015143,GO:0030246;Dbxref=FlyBase:FBan0011374,FlyBase_Annotation_IDs:CG11374,UniProt/TrEMBL:Q9VPI7,INTERPRO:IPR001079,INTERPRO:IPR013320,OrthoDB7_Drosophila:EOG735GGT,GB_protein:AAF51563,EntrezGene:33163,OrthoDB7_Insecta:EOG76QSHF,OrthoDB7_Arthropoda:EOG7WTGG5,OrthoDB7_Metazoa:EOG7S7SFG,InterologFinder:33163,FlyAtlas:CG11374-RA,GenomeRNAi:33163;gbunit=AE014134;derived_computed_cyto=21B1-21B1
2L	FlyBase	gene	82421	87387	.	-	.	ID=FBgn0002931;Name=net;fullname=net;Alias=FBgn0031215,CG11450,Shout,Group IId,shout,bHLHc42;Ontology_term=SO:0000010,SO:0000087,GO:0005634,GO:0003700,GO:0008586,GO:0006355,GO:0007474,GO:0000122,GO:0046983;Dbxref=FlyBase:FBan0011450,FlyBase_Annotation_IDs:CG11450,GB_protein:AAF51562,GB:AF303350,GB_protein:AAK14073,GB:CZ478919,GB:CZ478940,UniProt/TrEMBL:Q9VPI8,INTERPRO:IPR011598,GB_protein:AGB92326,OrthoDB7_Drosophila:EOG774925,OrthoDB7_Diptera:EOG786TM8,EntrezGene:45339,BDGP_clone:PC00159,UniProt/TrEMBL:Q7KH24,OrthoDB7_Insecta:EOG73VJM7,OrthoDB7_Arthropoda:EOG7SRH34,OrthoDB7_Metazoa:EOG73NG5F,BIOGRID:69604,FlyAtlas:CG11450-RA,InterologFinder:45339,GenomeRNAi:45339,INTERACTIVEFLY:/gene/net1.htm;gbunit=AE014134;derived_computed_cyto=21B1-21B1
2L	FlyBase	gene	94739	102086	.	+	.	ID=FBgn0031216;Name=Zir;fullname=Zizimin-related;Alias=FBgn0025528,anon-EST:Posey54,Dm zir,CG11376,FBgn 31216;Ontology_term=SO:0000010,SO:0000087,GO:0035010,GO:0006909,GO:0005089,GO:0035023,GO:0035011,GO:0005575;Dbxref=FlyBase:FBan0011376,FlyBase_Annotation_IDs:CG11376,GB_protein:AAF51561,GB:AA391952,GB:AF083301,GB:AW942162,GB:AZ877629,GB:BT015273,GB_protein:AAT94502,GB:CZ468078,GB:CZ468665,GB:CZ469343,GB:CZ470525,GB:CZ470937,GB:CZ480810,GB:CZ480811,GB:CZ483732,UniProt/TrEMBL:Q9VPI9,INTERPRO:IPR027007,INTERPRO:IPR027357,INTERPRO:IPR026791,OrthoDB7_Drosophila:EOG7DP1D5,OrthoDB7_Diptera:EOG78133C,EntrezGene:33165,INTERPRO:IPR021816,INTERPRO:IPR010703,BDGP_clone:LD10883,OrthoDB7_Insecta:EOG71CSK0,OrthoDB7_Arthropoda:EOG735G9K,OrthoDB7_Metazoa:EOG7P8P7G,BIOGRID:59427,InterologFinder:33165,FlyAtlas:CG11376-RA,Fly-FISH:CG11376,GenomeRNAi:33165;gbunit=AE014134;derived_computed_cyto=21B1-21B2
2L	FlyBase	gene	102380	104142	.	+	.	ID=FBgn0031217;Name=CG11377;Alias=CT31762;Ontology_term=SO:0000010,SO:0000087,GO:0005509,SO:0000548;Dbxref=FlyBase:FBan0011377,FlyBase_Annotation_IDs:CG11377,GB_protein:AAF51560,GB:AY071548,GB_protein:AAL49170,GB:BI371522,UniProt/TrEMBL:Q9VPJ0,INTERPRO:IPR000742,INTERPRO:IPR002049,INTERPRO:IPR006212,INTERPRO:IPR009030,INTERPRO:IPR013032,INTERPRO:IPR018097,INTERPRO:IPR021852,INTERPRO:IPR001881,GB_protein:AGB92327,UniProt/TrEMBL:M9PDP6,OrthoDB7_Drosophila:EOG799F97,OrthoDB7_Diptera:EOG7QK9VM,EntrezGene:33166,OrthoDB7_Insecta:EOG7GR8VQ,OrthoDB7_Arthropoda:EOG7PSCW4,OrthoDB7_Metazoa:EOG7Z3F4B,InterologFinder:33166,BIOGRID:59428,FlyAtlas:CG11377-RA,Fly-FISH:CG11377,GenomeRNAi:33166;gbunit=AE014134;derived_computed_cyto=21B2-21B2