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comparison mismatch_frequencies.xml @ 1:3613460e891e draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mismatch_frequencies commit 0beb86e6a562c0dad52afdc0f047b3887ad9ce8e-dirty
author mvdbeek
date Wed, 23 Mar 2016 09:59:33 -0400
parents 77de5fc623f9
children 2974c382105c
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0:77de5fc623f9 1:3613460e891e
1 <tool id="mismatch_frequencies" name="Mismatch Frequencies" version="0.0.9" hidden="false" > 1 <tool id="mismatch_frequencies" name="Mismatch Frequencies" version="0.1.0" hidden="false" >
2 <description>Analyze mismatch frequencies in BAM/SAM alignments</description> 2 <description>Analyze mismatch frequencies in BAM/SAM alignments</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.7.7">pysam</requirement> 4 <requirement type="package" version="0.7.7">pysam</requirement>
5 <requirement type="package" version="0.14.1">pandas</requirement> 5 <requirement type="package" version="0.14.1">pandas</requirement>
6 <requirement type="package" version="1.2.1">matplotlib</requirement> 6 <requirement type="package" version="1.2.1">matplotlib</requirement>
9 #for i in $rep 9 #for i in $rep
10 "$i.input_file" 10 "$i.input_file"
11 #end for 11 #end for
12 --name 12 --name
13 #for i in $rep 13 #for i in $rep
14 "$i.input_file.name" 14 "$i.input_file.element_identifier"
15 #end for 15 #end for
16 --output_pdf $output_pdf --output_tab $output_tab --min $min_length --max $max_length 16 --output_pdf $output_pdf --output_tab $output_tab --min $min_length --max $max_length
17 --n_mm $number_of_mismatches 17 --n_mm $number_of_mismatches
18 --five_p $five_p 18 --five_p $five_p
19 --three_p $three_p 19 --three_p $three_p