# HG changeset patch
# User mvdbeek
# Date 1458741573 14400
# Node ID 3613460e891e16c747db2a5929d2b8b54b6aaec9
# Parent  77de5fc623f90a1f2dc9a34683a576ee8c458e97
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mismatch_frequencies commit 0beb86e6a562c0dad52afdc0f047b3887ad9ce8e-dirty

diff -r 77de5fc623f9 -r 3613460e891e mismatch_frequencies.xml
--- a/mismatch_frequencies.xml	Wed May 27 13:40:23 2015 -0400
+++ b/mismatch_frequencies.xml	Wed Mar 23 09:59:33 2016 -0400
@@ -1,4 +1,4 @@
-<tool id="mismatch_frequencies" name="Mismatch Frequencies" version="0.0.9" hidden="false" >
+<tool id="mismatch_frequencies" name="Mismatch Frequencies" version="0.1.0" hidden="false" >
   <description>Analyze mismatch frequencies in BAM/SAM alignments</description>
   <requirements>
     <requirement type="package" version="0.7.7">pysam</requirement>
@@ -11,7 +11,7 @@
 		#end for
 		--name 
 		#for i in $rep
-			"$i.input_file.name"
+			"$i.input_file.element_identifier"
 		#end for
 		 --output_pdf $output_pdf --output_tab $output_tab --min $min_length --max $max_length
                  --n_mm $number_of_mismatches
diff -r 77de5fc623f9 -r 3613460e891e tool_dependencies.xml
--- a/tool_dependencies.xml	Wed May 27 13:40:23 2015 -0400
+++ b/tool_dependencies.xml	Wed Mar 23 09:59:33 2016 -0400
@@ -1,12 +1,12 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="pysam" version="0.7.7">
-        <repository changeset_revision="b62538c8c664" name="package_pysam_0_7_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="0a5141bdf9d0" name="package_pysam_0_7_7" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="pandas" version="0.14.1">
-        <repository changeset_revision="18e65cea168d" name="package_pandas_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="ac9f317487a9" name="package_pandas_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="matplotlib" version="1.2.1">
-        <repository changeset_revision="a03ee94316b5" name="package_matplotlib_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="48020985e28c" name="package_matplotlib_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>