Mercurial > repos > mvdbeek > package_biocbasics_2_14

annotate tool_dependencies.xml @ 0:f0ef1a7b157e draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
author mvdbeek
date Tue, 20 Oct 2015 13:29:08 -0400
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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1 <?xml version="1.0"?>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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2 <tool_dependency>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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3 <package name="R" version="3.1.2">
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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4 <repository changeset_revision="9f2fddb9d6e2" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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5 </package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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6 <package name="biocbasics" version="2.14">
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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7 <install version="1.0">
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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8 <actions>
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9 <action type="setup_r_environment">
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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10 <repository changeset_revision="9f2fddb9d6e2" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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11 <package name="R" version="3.1.2" />
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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12 </repository>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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13 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/RColorBrewer_1.1-2.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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14 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/stringr_0.6.2.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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15 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/gtools_3.4.1.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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21 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/limma_3.22.1.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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61 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/munsell_0.4.2.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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62 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/labeling_0.3.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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63 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/scales_0.2.4.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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64 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/proto_0.3-10.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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65 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/MASS_7.3-35.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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66 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/ggplot2_1.0.0.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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67 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/Formula_1.1-2.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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68 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/cluster_1.15.3.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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69 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/rpart_4.1-8.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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70 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/nnet_7.3-8.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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71 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/acepack_1.3-3.3.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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72 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/foreign_0.8-61.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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73 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/Hmisc_3.14-6.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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74 <package>https://github.com/fubar2/galaxy_tool_source/blob/master/RELEASE_2_14/diffcount/DESeq2_1.6.3.tar.gz?raw=true</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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75 <package>https://bitbucket.org/mvdbeek/galaxy_downloads/downloads/DESeq_1.20.0.tar.gz</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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76 <package>https://bitbucket.org/mvdbeek/galaxy_downloads/downloads/gridExtra_0.9.1.tar.gz</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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77 <package>https://bitbucket.org/mvdbeek/galaxy_downloads/downloads/qvalue_1.43.0.tar.gz</package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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78 </action>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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79 </actions>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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80 </install>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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81 <readme>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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82 Differential gene expression analysis
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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83 You may need libxml2-dev for XML to compile
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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84 Ubuntu has a bug with libgfortran. To fix that create a symlink like: sudo ln -s /usr/lib/x86_64-linux-gnu/libgfortran.so.3 /usr/lib/x86_64-linux-gnu/libgfortran.so
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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85 </readme>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
mvdbeek
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86 </package>
f0ef1a7b157e planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 6e8989aa8aceed7487747212b2bb782755ed6cf5
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87 </tool_dependency>