Mercurial > repos > mvdbeek > package_khmer_2_0_setuptools

changeset 0:3be0fed5b019 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/khmer/ commit dfaab7cbfdee82c9fe4ff34ce02b42fc456b9db9-dirty
author mvdbeek
date Wed, 16 Dec 2015 07:02:29 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 33 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Dec 16 07:02:29 2015 -0500
@@ -0,0 +1,33 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bz2file" version="0.98">
+        <repository changeset_revision="73382c8fa8f3" name="package_bz2file_0_98" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="screed" version="0.9">
+        <repository changeset_revision="639e5e37404d" name="package_screed_0_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="setuptools" version="19.0">
+        <repository changeset_revision="c13e63ae24ff" name="package_setuptools_19_0" owner="mvdbeek" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="khmer" version="2.0">
+        <install version="1.0">
+            <actions>
+                <action md5sum="1f610abd021254e21b082179a100cd39" type="download_by_url">https://pypi.python.org/packages/source/k/khmer/khmer-2.0.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="c13e63ae24ff" name="package_setuptools_19_0" owner="mvdbeek" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="setuptools" version="19.0" />
+                    </repository>
+                    </action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="shell_command">
+                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
+                    python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>