Mercurial > repos > mvdbeek > package_ncbi_vdb_2_5_2

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
author mvdbeek
date Wed, 04 Nov 2015 06:15:41 -0500
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-1:000000000000 0:1d307129f4f2
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="ngs_sdk" version="1.1.3">
4 <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="ncbi_vdb" version="2.5.2">
7 <install version="1.0">
8 <actions>
9 <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
10 <action type="set_environment_for_install">
11 <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
12 <package name="perl" version="5.18.1" />
13 </repository>
14 <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://toolshed.g2.bx.psu.edu">
15 <package name="ngs_sdk" version="1.1.3" />
16 </repository>
17 </action>
18 <action type="autoconf">--with-ngs-sdk-prefix=$NGS_SDK_DIR --prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
19 <action type="move_directory_files">
20 <source_directory>.</source_directory>
21 <destination_directory>$INSTALL_DIR/</destination_directory>
22 </action>
23 <action type="set_environment">
24 <environment_variable action="set_to" name="NCBI_VDB_DIR">$INSTALL_DIR</environment_variable>
25 </action>
26 </actions>
27 </install>
28 <readme>
29 ncbi-vdb, required for sra-tools package.
30 </readme>
31 </package>
32 </tool_dependency>