Mercurial > repos > mvdbeek > package_ncbi_vdb_2_5_2
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
author | mvdbeek |
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date | Wed, 04 Nov 2015 06:15:41 -0500 |
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<?xml version="1.0"?> <tool_dependency> <package name="ngs_sdk" version="1.1.3"> <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="ncbi_vdb" version="2.5.2"> <install version="1.0"> <actions> <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action> <action type="set_environment_for_install"> <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="perl" version="5.18.1" /> </repository> <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="ngs_sdk" version="1.1.3" /> </repository> </action> <action type="autoconf">--with-ngs-sdk-prefix=$NGS_SDK_DIR --prefix=$INSTALL_DIR --build=$INSTALL_DIR</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR/</destination_directory> </action> <action type="set_environment"> <environment_variable action="set_to" name="NCBI_VDB_DIR">$INSTALL_DIR</environment_variable> </action> </actions> </install> <readme> ncbi-vdb, required for sra-tools package. </readme> </package> </tool_dependency>