Mercurial > repos > mvdbeek > package_ngs_sdk_1_1_3
diff tool_dependencies.xml @ 0:2cc3f1941cb5 draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ngs_sdk_1_1_3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
| author | mvdbeek |
|---|---|
| date | Wed, 04 Nov 2015 06:10:25 -0500 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Wed Nov 04 06:10:25 2015 -0500 @@ -0,0 +1,28 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="perl" version="5.18.1"> + <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="ngs_sdk" version="1.1.3"> + <install version="1.0"> + <actions> + <action target_filename="ngs-1.1.3.tar.gz" type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="perl" version="5.18.1" /> + </repository> + </action> + <action type="change_directory">ngs-sdk</action> + <action type="autoconf">--prefix=$INSTALL_DIR --build=$INSTALL_DIR</action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="set_to" name="NGS_SDK_DIR">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + ncbi-ngs-sdk, required for sra-tools package. + + </readme> + </package> +</tool_dependency>