Mercurial > repos > mvdbeek > package_r_3_1_2

annotate tool_dependencies.xml @ 1:1c3403a95a91 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit 2abed15f2c4312c9e172dc15992b2de7d6ae790e-dirty
author mvdbeek
date Sun, 03 Jan 2016 05:24:14 -0500
parents f8bac21b6e71
children 174b90e5a7ec
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f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
parents:
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1 <?xml version="1.0"?>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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2 <tool_dependency>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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3 <package name="R" version="3.1.2">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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4 <install version="1.0">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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5 <actions_group>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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6 <actions architecture="x86_64" os="linux">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/R/R-3.1.2-Linux-x84_64.tgz</action>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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8 <action type="move_directory_files">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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9 <source_directory>.</source_directory>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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10 <destination_directory>$INSTALL_DIR</destination_directory>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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11 </action>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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12 <action type="set_environment">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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13 <environment_variable action="set_to" name="TCL_LIBRARY">$INSTALL_DIR/lib/libtcl8.4.so</environment_variable>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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14 <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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15 </action>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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16 </actions>
1
1c3403a95a91 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit 2abed15f2c4312c9e172dc15992b2de7d6ae790e-dirty
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17 <actions>
0
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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18 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.1.2.tar.gz</action>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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19 <package name="readline" version="6.2">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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20 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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21 </package>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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22 <package name="libpng" version="1.6.7">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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23 <repository changeset_revision="3de32cd300a9" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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24 </package>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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25 <package name="cairo" version="1.12.14">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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26 <repository changeset_revision="cd2ed5717e38" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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27 </package>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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28 <package name="pixman" version="0.32.4">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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29 <repository changeset_revision="93cd8e03820c" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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30 </package>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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31 <package name="freetype" version="2.5.2">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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32 <repository changeset_revision="a65217367e4a" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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33 </package>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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34 <package name="ncurses" version="5.9">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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35 <repository changeset_revision="335417c1475e" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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36 </package>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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37 <action type="set_environment_for_install">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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38 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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39 <package name="readline" version="6.2" />
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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40 </repository>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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41 <repository changeset_revision="3de32cd300a9" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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42 <package name="libpng" version="1.6.7" />
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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43 </repository>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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44 <repository changeset_revision="cd2ed5717e38" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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45 <package name="cairo" version="1.12.14" />
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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46 </repository>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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47 <repository changeset_revision="93cd8e03820c" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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48 <package name="pixman" version="0.32.4" />
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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49 </repository>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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50 <repository changeset_revision="a65217367e4a" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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51 <package name="freetype" version="2.5.2" />
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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52 </repository>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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53 <repository changeset_revision="335417c1475e" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
mvdbeek
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54 <package name="ncurses" version="5.9" />
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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55 </repository>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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56 </action>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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57 <action type="autoconf">--with-tcltk --with-blas --with-lapack --with-readline --with-cairo --with-libpng --without-x --without-aqua --enable-R-shlib --disable-R-framework --libdir=$INSTALL_DIR/lib
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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58 </action>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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59 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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60 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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61 </actions>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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62 <action type="set_environment">
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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63 <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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64 <environment_variable action="set_to" name="R_HOME_DIR">$INSTALL_DIR/lib/R</environment_variable>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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65 <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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66 <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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67 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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68 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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69 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
f8bac21b6e71 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
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70 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
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71 <environment_variable action="set_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
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72 <environment_variable action="set_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
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73 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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74 </action>
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75 </actions_group>
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76 </install>
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77 <readme>
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78 The precompiled versions of this package were built 2014-12-21.
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79 R is a free software environment for statistical computing and graphics.
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80 NOTE: See custom compilation options above.
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81 </readme>
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82 </package>
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83 </tool_dependency>