Mercurial > repos > mvdbeek > package_r_3_1_2

comparison tool_dependencies.xml @ 0:f8bac21b6e71 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_r_3_1_2 commit f312c3645204d671a70c21ad5f17b9dcd5ccf22d-dirty
author mvdbeek
date Sun, 03 Jan 2016 04:58:20 -0500
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children 1c3403a95a91
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-1:000000000000 0:f8bac21b6e71
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="R" version="3.1.2">
4 <install version="1.0">
5 <actions_group>
6 <actions architecture="x86_64" os="linux">
7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/R/R-3.1.2-Linux-x84_64.tgz</action>
8 <action type="move_directory_files">
9 <source_directory>.</source_directory>
10 <destination_directory>$INSTALL_DIR</destination_directory>
11 </action>
12 <action type="set_environment">
13 <environment_variable action="set_to" name="TCL_LIBRARY">$INSTALL_DIR/lib/libtcl8.4.so</environment_variable>
14 <environment_variable action="set_to" name="TK_LIBRARY">$INSTALL_DIR/lib/libtk8.4.so</environment_variable>
15 </action>
16 </actions>
17 <actions architecture="x86_64" os="darwin">
18 <action type="download_by_url">http://cran.rstudio.com/src/base/R-3/R-3.1.2.tar.gz</action>
19 <package name="readline" version="6.2">
20 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
21 </package>
22 <package name="libpng" version="1.6.7">
23 <repository changeset_revision="3de32cd300a9" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
24 </package>
25 <package name="cairo" version="1.12.14">
26 <repository changeset_revision="cd2ed5717e38" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
27 </package>
28 <package name="pixman" version="0.32.4">
29 <repository changeset_revision="93cd8e03820c" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
30 </package>
31 <package name="freetype" version="2.5.2">
32 <repository changeset_revision="a65217367e4a" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
33 </package>
34 <package name="ncurses" version="5.9">
35 <repository changeset_revision="335417c1475e" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
36 </package>
37 <action type="set_environment_for_install">
38 <repository changeset_revision="52d6f646b3b5" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
39 <package name="readline" version="6.2" />
40 </repository>
41 <repository changeset_revision="3de32cd300a9" name="package_libpng_1_6_7" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
42 <package name="libpng" version="1.6.7" />
43 </repository>
44 <repository changeset_revision="cd2ed5717e38" name="package_cairo_1_12_14" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
45 <package name="cairo" version="1.12.14" />
46 </repository>
47 <repository changeset_revision="93cd8e03820c" name="package_pixman_0_32_4" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
48 <package name="pixman" version="0.32.4" />
49 </repository>
50 <repository changeset_revision="a65217367e4a" name="package_freetype_2_5_2" owner="devteam" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
51 <package name="freetype" version="2.5.2" />
52 </repository>
53 <repository changeset_revision="335417c1475e" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
54 <package name="ncurses" version="5.9" />
55 </repository>
56 </action>
57 <action type="autoconf">--with-tcltk --with-blas --with-lapack --with-readline --with-cairo --with-libpng --without-x --without-aqua --enable-R-shlib --disable-R-framework --libdir=$INSTALL_DIR/lib
58 </action>
59 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R</action>
60 <action type="shell_command">sed -i.bak -e 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R</action>
61 </actions>
62 <action type="set_environment">
63 <environment_variable action="set_to" name="R_DOC_DIR">$INSTALL_DIR/lib/R/doc</environment_variable>
64 <environment_variable action="set_to" name="R_HOME_DIR">$INSTALL_DIR/lib/R</environment_variable>
65 <environment_variable action="set_to" name="R_INCLUDE_DIR">$INSTALL_DIR/lib/R/include</environment_variable>
66 <environment_variable action="set_to" name="R_SHARE_DIR">$INSTALL_DIR/lib/R/share</environment_variable>
67 <environment_variable action="set_to" name="R_ROOT_DIR">$INSTALL_DIR</environment_variable>
68 <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
69 <environment_variable action="set_to" name="RHOME">$INSTALL_DIR/lib/R</environment_variable>
70 <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
71 <environment_variable action="set_to" name="PKG_CONFIG_DIR">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
72 <environment_variable action="set_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig:$INSTALL_DIR/share/pkgconfig</environment_variable>
73 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
74 </action>
75 </actions_group>
76 </install>
77 <readme>
78 The precompiled versions of this package were built 2014-12-21.
79 R is a free software environment for statistical computing and graphics.
80 NOTE: See custom compilation options above.
81 </readme>
82 </package>
83 </tool_dependency>