Mercurial > repos > mvdbeek > package_r_3_2_1_goseq_1_22_0
comparison tool_dependencies.xml @ 0:388c91fb949b draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit a01781fce7ed5fcdd11062d2fe68ab17bdb176fc
author | mvdbeek |
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date | Tue, 23 Feb 2016 12:55:25 -0500 |
parents | |
children | 24d23efd6255 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="R" version="3.2.1"> | |
4 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
5 </package> | |
6 <package name="libxml2" version="2.9.1"> | |
7 <repository changeset_revision="45b16a3ab504" name="package_libxml2_2_9_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
8 </package> | |
9 <package name="goseq" version="1.22.0"> | |
10 <install version="1.0"> | |
11 <actions> | |
12 <action type="setup_r_environment"> | |
13 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
14 <package name="R" version="3.2.1" /> | |
15 </repository> | |
16 <!-- libxml2 needs to be sourced after R because R also was compiled against a different version of libxml2 --> | |
17 <repository changeset_revision="45b16a3ab504" name="package_libxml2_2_9_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
18 <package name="libxml2" version="2.9.1" /> | |
19 </repository> | |
20 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/BiasedUrn_1.07.tar.gz?raw=true</package> | |
21 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/BiocGenerics_0.16.1.tar.gz?raw=true</package> | |
22 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/S4Vectors_0.8.11.tar.gz?raw=true</package> | |
23 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/IRanges_2.4.7.tar.gz?raw=true</package> | |
24 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/GenomeInfoDb_1.6.3.tar.gz?raw=true</package> | |
25 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/Biobase_2.30.0.tar.gz?raw=true</package> | |
26 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/DBI_0.3.1.tar.gz?raw=true</package> | |
27 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/RSQLite_1.0.0.tar.gz?raw=true</package> | |
28 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/AnnotationDbi_1.32.3.tar.gz?raw=true</package> | |
29 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/geneLenDataBase_1.6.0.tar.gz?raw=true</package> | |
30 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/GO.db_3.2.2.tar.gz?raw=true</package> | |
31 <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/goseq_1.22.0.tar.gz?raw=true</package> | |
32 </action> | |
33 </actions> | |
34 </install> | |
35 <readme> | |
36 goseq Gene Ontology analyser | |
37 ----- | |
38 Does selection-unbiased testing for category enrichment amongst differentially expressed (DE) genes for RNA-seq data. | |
39 By default, tests gene ontology (GO) categories, but any categories may be tested. | |
40 </readme> | |
41 </package> | |
42 </tool_dependency> |