Mercurial > repos > mvdbeek > r_goseq_1_22_0

annotate tool-data/genomes.loc.sample @ 14:ade115e181d7 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
author mvdbeek
date Thu, 25 Feb 2016 07:23:02 -0500
parents fe71b97cc1a5
children
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fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
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1 hg38 hg38, Human, Dec. 2013, Genome Reference Consortium GRCh38
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2 hg19 hg19, Human, Feb. 2009, Genome Reference Consortium GRCh37
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3 hg18 hg18, Human, Mar. 2006, NCBI Build 36.1
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4 hg17 hg17, Human, May 2004, NCBI Build 35
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5 hg16 hg16, Human, Jul. 2003, NCBI Build 34
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6 vicPac2 vicPac2, Alpaca, Mar. 2013, Broad Institute Vicugna_pacos-2.0.1
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7 vicPac1 vicPac1, Alpaca, Jul. 2008, Broad Institute VicPac1.0
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8 dasNov3 dasNov3, Armadillo, Dec. 2011, Broad Institute DasNov3
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9 otoGar3 otoGar3, Bushbaby, Mar. 2011, Broad Institute OtoGar3
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10 papHam1 papHam1, Baboon, Nov. 2008, Baylor College of Medicine HGSC Pham_1.0
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11 papAnu2 papAnu2, Baboon, Mar. 2012, Baylor College of Medicine Panu_2.0
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12 felCat8 felCat8, Cat, Nov. 2014, ICGSC Felis_catus_8.0
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13 felCat5 felCat5, Cat, Sep. 2011, ICGSC Felis_catus-6.2
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14 felCat4 felCat4, Cat, Dec. 2008, NHGRI catChrV17e
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15 felCat3 felCat3, Cat, Mar. 2006, Broad Institute Release 3
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16 panTro4 panTro4, Chimp, Feb. 2011, CGSC Build 2.1.4
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17 panTro3 panTro3, Chimp, Oct. 2010, CGSC Build 2.1.3
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18 panTro2 panTro2, Chimp, Mar. 2006, CGSC Build 2.1
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19 panTro1 panTro1, Chimp, Nov. 2003, CGSC Build 1.1
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20 criGri1 criGri1, Chinese hamster, Jul. 2013, Beijing Genomics Institution-Shenzhen C_griseus_v1.0
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21 bosTau8 bosTau8, Cow, Jun. 2014, University of Maryland v3.1.1
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22 bosTau7 bosTau7, Cow, Oct. 2011, Baylor College of Medicine HGSC Btau_4.6.1
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23 bosTau6 bosTau6, Cow, Nov. 2009, University of Maryland v3.1
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24 bosTau4 bosTau4, Cow, Oct. 2007, Baylor College of Medicine HGSC Btau_4.0
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25 bosTau3 bosTau3, Cow, Aug. 2006, Baylor College of Medicine HGSC Btau_3.1
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26 bosTau2 bosTau2, Cow, Mar. 2005, Baylor College of Medicine HGSC Btau_2.0
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27 canFam3 canFam3, Dog, Sep. 2011, Broad Institute v3.1
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28 canFam2 canFam2, Dog, May 2005, Broad Institute v2.0
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29 canFam1 canFam1, Dog, Jul. 2004, Broad Institute v1.0
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30 turTru2 turTru2, Dolphin, Oct. 2011, Baylor College of Medicine Ttru_1.4
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31 loxAfr3 loxAfr3, Elephant, Jul. 2009, Broad Institute LoxAfr3
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32 musFur1 musFur1, Ferret, Apr. 2011, Ferret Genome Sequencing Consortium MusPutFur1.0
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33 nomLeu3 nomLeu3, Gibbon, Oct. 2012, Gibbon Genome Sequencing Consortium Nleu3.0
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34 nomLeu2 nomLeu2, Gibbon, Jun. 2011, Gibbon Genome Sequencing Consortium Nleu1.1
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35 nomLeu1 nomLeu1, Gibbon, Jan. 2010, Gibbon Genome Sequencing Consortium Nleu1.0
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36 gorGor3 gorGor3, Gorilla, May 2011, Wellcome Trust Sanger Institute gorGor3.1
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37 cavPor3 cavPor3, Guinea pig, Feb. 2008, Broad Institute cavPor3
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38 eriEur2 eriEur2, Hedgehog, May 2012, Broad Institute EriEur2.0
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39 eriEur1 eriEur1, Hedgehog, Jun. 2006, Broad Institute Draft_v1
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40 equCab2 equCab2, Horse, Sep. 2007, Broad Institute EquCab2
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41 equCab1 equCab1, Horse, Jan. 2007, Broad Institute EquCab1
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42 dipOrd1 dipOrd1, Kangaroo rat, Jul. 2008, Baylor/Broad Institute DipOrd1.0
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43 triMan1 triMan1, Manatee, Oct. 2011, Broad Institute TriManLat1.0
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44 calJac3 calJac3, Marmoset, Mar. 2009, WUSTL Callithrix_jacchus-v3.2
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45 calJac1 calJac1, Marmoset, Jun. 2007, WUSTL Callithrix_jacchus-v2.0.2
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46 pteVam1 pteVam1, Megabat, Jul. 2008, Broad Institute Ptevap1.0
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47 myoLuc2 myoLuc2, Microbat, Jul. 2010, Broad Institute MyoLuc2.0
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48 balAcu1 balAcu1, Minke whale, Oct. 2013, KORDI BalAcu1.0
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49 mm10 mm10, Mouse, Dec. 2011, Genome Reference Consortium GRCm38
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50 mm9 mm9, Mouse, Jul. 2007, NCBI Build 37
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51 mm8 mm8, Mouse, Feb. 2006, NCBI Build 36
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52 mm7 mm7, Mouse, Aug. 2005, NCBI Build 35
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53 micMur2 micMur2, Mouse lemur, May 2015, Baylor/Broad Institute Mmur_2.0
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54 micMur1 micMur1, Mouse lemur, Jul. 2007, Broad Institute MicMur1.0
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55 hetGla2 hetGla2, Naked mole-rat, Jan. 2012, Broad Institute HetGla_female_1.0
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56 hetGla1 hetGla1, Naked mole-rat, Jul. 2011, Beijing Genomics Institute HetGla_1.0
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57 monDom5 monDom5, Opossum, Oct. 2006, Broad Institute release MonDom5
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58 monDom4 monDom4, Opossum, Jan. 2006, Broad Institute release MonDom4
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59 monDom1 monDom1, Opossum, Oct. 2004, Broad Institute release MonDom1
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60 ponAbe2 ponAbe2, Orangutan, Jul. 2007, WUSTL Pongo_albelii-2.0.2
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61 ailMel1 ailMel1, Panda, Dec. 2009, BGI-Shenzhen AilMel 1.0
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62 susScr3 susScr3, Pig, Aug. 2011, Swine Genome Sequencing Consortium Sscrofa10.2
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63 susScr2 susScr2, Pig, Nov. 2009, Swine Genome Sequencing Consortium Sscrofa9.2
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64 ochPri3 ochPri3, Pika, May 2012, Broad Institute OchPri3.0
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65 ochPri2 ochPri2, Pika, Jul. 2008, Broad Institute OchPri2
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66 ornAna2 ornAna2, Platypus, Feb. 2007, WUSTL v5.0.1
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67 ornAna1 ornAna1, Platypus, Mar. 2007, WUSTL v5.0.1
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68 oryCun2 oryCun2, Rabbit, Apr. 2009, Broad Institute release OryCun2
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69 rn6 rn6, Rat, Jul. 2014, RGSC Rnor_6.0
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70 rn5 rn5, Rat, Mar. 2012, RGSC Rnor_5.0
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71 rn4 rn4, Rat, Nov. 2004, Baylor College of Medicine HGSC v3.4
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72 rn3 rn3, Rat, Jun. 2003, Baylor College of Medicine HGSC v3.1
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73 rheMac3 rheMac3, Rhesus, Oct. 2010, Beijing Genomics Institute CR_1.0
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74 rheMac2 rheMac2, Rhesus, Jan. 2006, Baylor College of Medicine HGSC v1.0 Mmul_051212
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75 proCap1 proCap1, Rock hyrax, Jul. 2008, Baylor College of Medicine HGSC Procap1.0
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76 oviAri3 oviAri3, Sheep, Aug. 2012, ISGC Oar_v3.1
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77 oviAri1 oviAri1, Sheep, Feb. 2010, ISGC Ovis aries 1.0
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78 sorAra2 sorAra2, Shrew, Aug. 2008, Broad Institute SorAra2.0
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79 sorAra1 sorAra1, Shrew, Jun. 2006, Broad Institute SorAra1.0
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80 choHof1 choHof1, Sloth, Jul. 2008, Broad Institute ChoHof1.0
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81 speTri2 speTri2, Squirrel, Nov. 2011, Broad Institute SpeTri2.0
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82 saiBol1 saiBol1, Squirrel monkey, Oct. 2011, Broad Institute SaiBol1.0
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83 tarSyr2 tarSyr2, Tarsier, Sep. 2013, WashU Tarsius_syrichta-2.0.1
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84 tarSyr1 tarSyr1, Tarsier, Aug. 2008, WUSTL/Broad Institute Tarsyr1.0
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85 sarHar1 sarHar1, Tasmanian devil, Feb. 2011, Wellcome Trust Sanger Institute Devil_refv7.0
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86 echTel2 echTel2, Tenrec, Nov. 2012, Broad Institute EchTel2.0
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87 echTel1 echTel1, Tenrec, Jul. 2005, Broad Institute echTel1
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88 tupBel1 tupBel1, Tree shrew, Dec. 2006, Broad Institute Tupbel1.0
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89 macEug2 macEug2, Wallaby, Sep. 2009, Tammar Wallaby Genome Sequencing Consortium Meug_1.1
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
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90 cerSim1 cerSim1, White rhinoceros, May 2012, Broad Institute CerSimSim1.0
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91 allMis1 allMis1, American alligator, Aug. 2012, Int. Crocodilian Genomes Working Group allMis0.2
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92 gadMor1 gadMor1, Atlantic cod, May 2010, Genofisk GadMor_May2010
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93 melUnd1 melUnd1, Budgerigar, Sep. 2011, WUSTL v6.3
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94 galGal4 galGal4, Chicken, Nov.
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
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95 2011, ICGC Gallus-gallus-4.0
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96 galGal3 galGal3, Chicken, May 2006, WUSTL Gallus-gallus-2.1
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97 galGal2 galGal2, Chicken, Feb. 2004, WUSTL Gallus-gallus-1.0
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
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98 latCha1 latCha1, Coelacanth, Aug. 2011, Broad Institute LatCha1
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99 calMil1 calMil1, Elephant shark, Dec. 2013, IMCB Callorhinchus_milli_6.1.3
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
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100 fr3 fr3, Fugu, Oct. 2011, JGI v5.0
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101 fr2 fr2, Fugu, Oct. 2004, JGI v4.0
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102 fr1 fr1, Fugu, Aug. 2002, JGI v3.0
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103 petMar2 petMar2, Lamprey, Sep. 2010, WUGSC 7.0
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104 petMar1 petMar1, Lamprey, Mar. 2007, WUSTL v3.0
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105 anoCar2 anoCar2, Lizard, May 2010, Broad Institute AnoCar2
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106 anoCar1 anoCar1, Lizard, Feb. 2007, Broad Institute AnoCar1
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107 oryLat2 oryLat2, Medaka, Oct. 2005, NIG v1.0
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108 geoFor1 geoFor1, Medium ground finch, Apr. 2012, BGI GeoFor_1.0 / NCBI 13302
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109 oreNil2 oreNil2, Nile tilapia, Jan. 2011, Broad Institute Release OreNil1.1
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110 chrPic1 chrPic1, Painted turtle, Dec. 2011, IPTGSC Chrysemys_picta_bellii-3.0.1
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111 gasAcu1 gasAcu1, Stickleback, Feb. 2006, Broad Institute Release 1.0
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112 tetNig2 tetNig2, Tetraodon, Mar. 2007, Genoscope v7
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113 tetNig1 tetNig1, Tetraodon, Feb. 2004, Genoscope v7
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114 melGal1 melGal1, Turkey, Dec. 2009, Turkey Genome Consortium v2.01
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115 xenTro7 xenTro7, X. tropicalis, Sep. 2012, JGI v.7.0
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116 xenTro3 xenTro3, X. tropicalis, Nov. 2009, JGI v.4.2
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117 xenTro2 xenTro2, X. tropicalis, Aug. 2005, JGI v.4.1
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118 xenTro1 xenTro1, X. tropicalis, Oct. 2004, JGI v.3.0
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119 taeGut2 taeGut2, Zebra finch, Feb. 2013, WashU taeGut324
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120 taeGut1 taeGut1, Zebra finch, Jul. 2008, WUSTL v3.2.4
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121 danRer10 danRer10, Zebrafish, Sep. 2014, Genome Reference Consortium GRCz10
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122 danRer7 danRer7, Zebrafish, Jul. 2010, Sanger Institute Zv9
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123 danRer6 danRer6, Zebrafish, Dec. 2008, Sanger Institute Zv8
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124 danRer5 danRer5, Zebrafish, Jul. 2007, Sanger Institute Zv7
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125 danRer4 danRer4, Zebrafish, Mar. 2006, Sanger Institute Zv6
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126 danRer3 danRer3, Zebrafish, May 2005, Sanger Institute Zv5
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127 ci2 ci2, C. intestinalis, Mar. 2005, JGI v2.0
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128 ci1 ci1, C. intestinalis, Dec. 2002, JGI v1.0
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129 braFlo1 braFlo1, Lancelet, Mar. 2006, JGI v1.0
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130 strPur2 strPur2, S. purpuratus, Sep. 2006, Baylor College of Medicine HGSC v. Spur 2.1
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131 strPur1 strPur1, S. purpuratus, Apr. 2005, Baylor College of Medicine HGSC v. Spur_0.5
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132 apiMel2 apiMel2, A. mellifera, Jan. 2005, Baylor College of Medicine HGSC v.Amel_2.0
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133 apiMel1 apiMel1, A. mellifera, Jul. 2004, Baylor College of Medicine HGSC v.Amel_1.2
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134 anoGam1 anoGam1, A. gambiae, Feb. 2003, IAGP v.MOZ2
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135 droAna2 droAna2, D. ananassae, Aug. 2005, Agencourt Arachne release
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136 droAna1 droAna1, D. ananassae, Jul. 2004, TIGR Celera release
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137 droEre1 droEre1, D. erecta, Aug. 2005, Agencourt Arachne release
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138 droGri1 droGri1, D. grimshawi, Aug. 2005, Agencourt Arachne release
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139 dm6 dm6, D. melanogaster, Aug. 2014, BDGP Release 6 + ISO1 MT
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140 dm3 dm3, D. melanogaster, Apr. 2006, BDGP Release 5
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141 dm2 dm2, D. melanogaster, Apr. 2004, BDGP Release 4
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142 dm1 dm1, D. melanogaster, Jan. 2003, BDGP Release 3
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143 droMoj2 droMoj2, D. mojavensis, Aug. 2005, Agencourt Arachne release
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144 droMoj1 droMoj1, D. mojavensis, Aug. 2004, Agencourt Arachne release
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145 droPer1 droPer1, D. persimilis, Oct. 2005, Broad Institute release
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146 dp3 dp3, D. pseudoobscura, Nov. 2004, Flybase Release 1.0
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147 dp2 dp2, D. pseudoobscura, Aug. 2003, Baylor College of Medicine HGSC Freeze 1
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148 droSec1 droSec1, D. sechellia, Oct. 2005, Broad Institute Release 1.0
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149 droSim1 droSim1, D. simulans, Apr. 2005, WUSTL Release 1.0
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150 droVir2 droVir2, D. virilis, Aug. 2005, Agencourt Arachne release
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151 droVir1 droVir1, D. virilis, Jul. 2004, Agencourt Arachne release
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152 droYak2 droYak2, D. yakuba, Nov. 2005, WUSTL Release 2.0
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153 droYak1 droYak1, D. yakuba, Apr. 2004, WUSTL Release 1.0
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154 caePb2 caePb2, C. brenneri, Feb. 2008, WUSTL 6.0.1
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155 caePb1 caePb1, C. brenneri, Jan. 2007, WUSTL 4.0
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156 cb3 cb3, C. briggsae, Jan. 2007, WUSTL Cb3
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157 cb1 cb1, C. briggsae, Jul. 2002, WormBase v. cb25.agp8
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158 ce10 ce10, C. elegans, Oct. 2010, WormBase v. WS220
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159 ce6 ce6, C. elegans, May 2008, WormBase v. WS190
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160 ce4 ce4, C. elegans, Jan. 2007, WormBase v. WS170
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161 ce2 ce2, C. elegans, Mar. 2004, WormBase v. WS120
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162 caeJap1 caeJap1, C. japonica, Mar. 2008, WUSTL 3.0.2
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163 caeRem3 caeRem3, C. remanei, May 2007, WUSTL 15.0.1
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164 caeRem2 caeRem2, C. remanei, Mar. 2006, WUSTL 1.0
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165 priPac1 priPac1, P. pacificus, Feb. 2007, WUSTL 5.0
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166 aplCal1 aplCal1, Sea Hare, Sep. 2008, Broad Release Aplcal2.0
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167 sacCer3 sacCer3, Yeast, April 2011, SGD April 2011 sequence
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168 sacCer2 sacCer2, Yeast, June 2008, SGD June 2008 sequence
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169 sacCer1 sacCer1, Yeast, Oct. 2003, SGD 1 Oct 2003 sequence
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170 eboVir3 eboVir3, Ebola Virus, June 2014, Sierra Leone 2014 (G3683/KM034562.1)