Mercurial > repos > mvdbeek > r_goseq_1_22_0

comparison get_length_and_gc_content.xml @ 7:15ce6435ab83 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
author mvdbeek
date Thu, 25 Feb 2016 06:09:34 -0500
parents a6198fc1116f
children f036e2d66c85
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6:d4b5942ed347 7:15ce6435ab83
4 <requirement type="package" version="3.2.1">R</requirement> 4 <requirement type="package" version="3.2.1">R</requirement>
5 <requirement type="package" version="1.22.0">goseq</requirement> 5 <requirement type="package" version="1.22.0">goseq</requirement>
6 </requirements> 6 </requirements>
7 <command interpreter="Rscript"> 7 <command interpreter="Rscript">
8 get_length_and_gc_content.r --gtf "$gtf" 8 get_length_and_gc_content.r --gtf "$gtf"
9 --fasta "$fastaSource.fasta" 9 #if $fastaSource.genomeSource == "indexed":
10 --fasta "$fastaSource.fasta.fields.path"
11 #else:
12 --fasta "$fastaSource.fasta"
10 --output "output" 13 --output "output"
11 </command> 14 </command>
12 <inputs> 15 <inputs>
13 <param help="The GTF must match the FASTA file" label="GTF file for length and GC calculation" name="gtf" type="data" /> 16 <param help="The GTF must match the FASTA file" label="GTF file for length and GC calculation" name="gtf" type="data" />
14 <conditional name="fastaSource"> 17 <conditional name="fastaSource">