Mercurial > repos > mvdbeek > r_goseq_1_22_0

comparison get_length_and_gc_content.xml @ 14:ade115e181d7 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
author mvdbeek
date Thu, 25 Feb 2016 07:23:02 -0500
parents 1802ccf465b8
children e3b1dd2f7f70
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13:ea84562a5115 14:ade115e181d7
7 <command interpreter="Rscript"> 7 <command interpreter="Rscript">
8 get_length_and_gc_content.r --gtf "$gtf" 8 get_length_and_gc_content.r --gtf "$gtf"
9 #if $fastaSource.genomeSource == "indexed": 9 #if $fastaSource.genomeSource == "indexed":
10 --fasta "$fastaSource.fasta_pre_installed.fields.path" 10 --fasta "$fastaSource.fasta_pre_installed.fields.path"
11 #else: 11 #else:
12 --fasta "$fastaSource.fasta_history" 12 --fasta "$fastaSource.history.fasta_history"
13 #end if 13 #end if
14 --output "$output" 14 --output "$output"
15 </command> 15 </command>
16 <inputs> 16 <inputs>
17 <param help="The GTF must match the FASTA file" label="GTF file for length and GC calculation" name="gtf" type="data" /> 17 <param help="The GTF must match the FASTA file" label="GTF file for length and GC calculation" name="gtf" type="data" />