diff test-data/gene_ids.loc @ 17:1b03f6232900 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
author mvdbeek
date Fri, 26 Feb 2016 08:49:59 -0500
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gene_ids.loc	Fri Feb 26 08:49:59 2016 -0500
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+knownGene	knownGene, UCSC Genes, NA, Entrez Gene ID
+knownGeneOld3	knownGeneOld3, Old UCSC Genes, NA, 
+ccdsGene	ccdsGene, CCDS, NA, 
+refGene	refGene, RefSeq Genes, NA, Entrez Gene ID
+xenoRefGene	xenoRefGene, Other RefSeq, NA, 
+vegaGene	vegaGene, Vega Genes, Vega Protein Genes, HAVANA Pseudogene ID
+vegaPseudoGene	vegaPseudoGene, Vega Genes, Vega Pseudogenes, HAVANA Pseudogene ID
+ensGene	ensGene, Ensembl Genes, NA, Ensembl gene ID
+acembly	acembly, AceView Genes, NA, 
+sibGene	sibGene, SIB Genes, NA, 
+nscanPasaGene	nscanPasaGene, N-SCAN, N-SCAN PASA-EST, 
+nscanGene	nscanGene, N-SCAN, N-SCAN, 
+sgpGene	sgpGene, SGP Genes, NA, 
+geneid	geneid, Geneid Genes, NA, 
+genscan	genscan, Genscan Genes, NA, 
+exoniphy	exoniphy, Exoniphy, NA, 
+augustusHints	augustusHints, Augustus, Augustus Hints, 
+augustusXRA	augustusXRA, Augustus, Augustus De Novo, 
+augustusAbinitio	augustusAbinitio, Augustus, Augustus Ab Initio, 
+acescan	acescan, ACEScan, NA, 
+lincRNAsTranscripts	lincRNAsTranscripts, lincRNAsTranscripts, NA, Name of gene
+wgEncodeGencodeManualV3	wgEncodeGencodeManualV3, Gencode Genes, Gencode Manual, Ensembl gene ID
+wgEncodeGencodeAutoV3	wgEncodeGencodeAutoV3, Gencode Genes, Gencode Auto, Ensembl gene ID
+wgEncodeGencodePolyaV3	wgEncodeGencodePolyaV3, Gencode Genes, Gencode PolyA, Ensembl gene ID
+wgEncodeGencodeBasicV17	wgEncodeGencodeBasicV17, GENCODE Genes V17, NA, Ensembl gene ID
+wgEncodeGencodeCompV17	wgEncodeGencodeCompV17, GENCODE Genes V17, NA, Ensembl gene ID
+wgEncodeGencodePseudoGeneV17	wgEncodeGencodePseudoGeneV17, GENCODE Genes V17, NA, Ensembl gene ID
+wgEncodeGencode2wayConsPseudoV17	wgEncodeGencode2wayConsPseudoV17, GENCODE Genes V17, NA, Ensembl gene ID
+wgEncodeGencodePolyaV17	wgEncodeGencodePolyaV17, GENCODE Genes V17, NA, Ensembl gene ID
+wgEncodeGencodeBasicV14	wgEncodeGencodeBasicV14, GENCODE Genes V14, NA, Ensembl gene ID
+wgEncodeGencodeCompV14	wgEncodeGencodeCompV14, GENCODE Genes V14, NA, Ensembl gene ID
+wgEncodeGencodePseudoGeneV14	wgEncodeGencodePseudoGeneV14, GENCODE Genes V14, NA, Ensembl gene ID
+wgEncodeGencode2wayConsPseudoV14	wgEncodeGencode2wayConsPseudoV14, GENCODE Genes V14, NA, Ensembl gene ID
+wgEncodeGencodePolyaV14	wgEncodeGencodePolyaV14, GENCODE Genes V14, NA, Ensembl gene ID
+wgEncodeGencodeBasicV7	wgEncodeGencodeBasicV7, GENCODE Genes V7, NA, Ensembl gene ID
+wgEncodeGencodeCompV7	wgEncodeGencodeCompV7, GENCODE Genes V7, NA, Ensembl gene ID
+wgEncodeGencodePseudoGeneV7	wgEncodeGencodePseudoGeneV7, GENCODE Genes V7, NA, Ensembl gene ID
+wgEncodeGencode2wayConsPseudoV7	wgEncodeGencode2wayConsPseudoV7, GENCODE Genes V7, NA, Ensembl gene ID
+wgEncodeGencodePolyaV7	wgEncodeGencodePolyaV7, GENCODE Genes V7, NA, Ensembl gene ID
+flyBaseGene	flyBaseGene, FlyBase Genes, NA, Name of canonical transcript in cluster
+sgdGene	sgdGene, SGD Genes, NA, Name of canonical transcript in cluster
+geneSymbol	geneSymbol, refGene, refFlat, Gene Symbol