Mercurial > repos > mvdbeek > r_goseq_1_22_0
view test-data/genomes.loc @ 17:1b03f6232900 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
| author | mvdbeek |
|---|---|
| date | Fri, 26 Feb 2016 08:49:59 -0500 |
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hg38 hg38, Human, Dec. 2013, Genome Reference Consortium GRCh38 hg19 hg19, Human, Feb. 2009, Genome Reference Consortium GRCh37 hg18 hg18, Human, Mar. 2006, NCBI Build 36.1 hg17 hg17, Human, May 2004, NCBI Build 35 hg16 hg16, Human, Jul. 2003, NCBI Build 34 vicPac2 vicPac2, Alpaca, Mar. 2013, Broad Institute Vicugna_pacos-2.0.1 vicPac1 vicPac1, Alpaca, Jul. 2008, Broad Institute VicPac1.0 dasNov3 dasNov3, Armadillo, Dec. 2011, Broad Institute DasNov3 otoGar3 otoGar3, Bushbaby, Mar. 2011, Broad Institute OtoGar3 papHam1 papHam1, Baboon, Nov. 2008, Baylor College of Medicine HGSC Pham_1.0 papAnu2 papAnu2, Baboon, Mar. 2012, Baylor College of Medicine Panu_2.0 felCat8 felCat8, Cat, Nov. 2014, ICGSC Felis_catus_8.0 felCat5 felCat5, Cat, Sep. 2011, ICGSC Felis_catus-6.2 felCat4 felCat4, Cat, Dec. 2008, NHGRI catChrV17e felCat3 felCat3, Cat, Mar. 2006, Broad Institute Release 3 panTro4 panTro4, Chimp, Feb. 2011, CGSC Build 2.1.4 panTro3 panTro3, Chimp, Oct. 2010, CGSC Build 2.1.3 panTro2 panTro2, Chimp, Mar. 2006, CGSC Build 2.1 panTro1 panTro1, Chimp, Nov. 2003, CGSC Build 1.1 criGri1 criGri1, Chinese hamster, Jul. 2013, Beijing Genomics Institution-Shenzhen C_griseus_v1.0 bosTau8 bosTau8, Cow, Jun. 2014, University of Maryland v3.1.1 bosTau7 bosTau7, Cow, Oct. 2011, Baylor College of Medicine HGSC Btau_4.6.1 bosTau6 bosTau6, Cow, Nov. 2009, University of Maryland v3.1 bosTau4 bosTau4, Cow, Oct. 2007, Baylor College of Medicine HGSC Btau_4.0 bosTau3 bosTau3, Cow, Aug. 2006, Baylor College of Medicine HGSC Btau_3.1 bosTau2 bosTau2, Cow, Mar. 2005, Baylor College of Medicine HGSC Btau_2.0 canFam3 canFam3, Dog, Sep. 2011, Broad Institute v3.1 canFam2 canFam2, Dog, May 2005, Broad Institute v2.0 canFam1 canFam1, Dog, Jul. 2004, Broad Institute v1.0 turTru2 turTru2, Dolphin, Oct. 2011, Baylor College of Medicine Ttru_1.4 loxAfr3 loxAfr3, Elephant, Jul. 2009, Broad Institute LoxAfr3 musFur1 musFur1, Ferret, Apr. 2011, Ferret Genome Sequencing Consortium MusPutFur1.0 nomLeu3 nomLeu3, Gibbon, Oct. 2012, Gibbon Genome Sequencing Consortium Nleu3.0 nomLeu2 nomLeu2, Gibbon, Jun. 2011, Gibbon Genome Sequencing Consortium Nleu1.1 nomLeu1 nomLeu1, Gibbon, Jan. 2010, Gibbon Genome Sequencing Consortium Nleu1.0 gorGor3 gorGor3, Gorilla, May 2011, Wellcome Trust Sanger Institute gorGor3.1 cavPor3 cavPor3, Guinea pig, Feb. 2008, Broad Institute cavPor3 eriEur2 eriEur2, Hedgehog, May 2012, Broad Institute EriEur2.0 eriEur1 eriEur1, Hedgehog, Jun. 2006, Broad Institute Draft_v1 equCab2 equCab2, Horse, Sep. 2007, Broad Institute EquCab2 equCab1 equCab1, Horse, Jan. 2007, Broad Institute EquCab1 dipOrd1 dipOrd1, Kangaroo rat, Jul. 2008, Baylor/Broad Institute DipOrd1.0 triMan1 triMan1, Manatee, Oct. 2011, Broad Institute TriManLat1.0 calJac3 calJac3, Marmoset, Mar. 2009, WUSTL Callithrix_jacchus-v3.2 calJac1 calJac1, Marmoset, Jun. 2007, WUSTL Callithrix_jacchus-v2.0.2 pteVam1 pteVam1, Megabat, Jul. 2008, Broad Institute Ptevap1.0 myoLuc2 myoLuc2, Microbat, Jul. 2010, Broad Institute MyoLuc2.0 balAcu1 balAcu1, Minke whale, Oct. 2013, KORDI BalAcu1.0 mm10 mm10, Mouse, Dec. 2011, Genome Reference Consortium GRCm38 mm9 mm9, Mouse, Jul. 2007, NCBI Build 37 mm8 mm8, Mouse, Feb. 2006, NCBI Build 36 mm7 mm7, Mouse, Aug. 2005, NCBI Build 35 micMur2 micMur2, Mouse lemur, May 2015, Baylor/Broad Institute Mmur_2.0 micMur1 micMur1, Mouse lemur, Jul. 2007, Broad Institute MicMur1.0 hetGla2 hetGla2, Naked mole-rat, Jan. 2012, Broad Institute HetGla_female_1.0 hetGla1 hetGla1, Naked mole-rat, Jul. 2011, Beijing Genomics Institute HetGla_1.0 monDom5 monDom5, Opossum, Oct. 2006, Broad Institute release MonDom5 monDom4 monDom4, Opossum, Jan. 2006, Broad Institute release MonDom4 monDom1 monDom1, Opossum, Oct. 2004, Broad Institute release MonDom1 ponAbe2 ponAbe2, Orangutan, Jul. 2007, WUSTL Pongo_albelii-2.0.2 ailMel1 ailMel1, Panda, Dec. 2009, BGI-Shenzhen AilMel 1.0 susScr3 susScr3, Pig, Aug. 2011, Swine Genome Sequencing Consortium Sscrofa10.2 susScr2 susScr2, Pig, Nov. 2009, Swine Genome Sequencing Consortium Sscrofa9.2 ochPri3 ochPri3, Pika, May 2012, Broad Institute OchPri3.0 ochPri2 ochPri2, Pika, Jul. 2008, Broad Institute OchPri2 ornAna2 ornAna2, Platypus, Feb. 2007, WUSTL v5.0.1 ornAna1 ornAna1, Platypus, Mar. 2007, WUSTL v5.0.1 oryCun2 oryCun2, Rabbit, Apr. 2009, Broad Institute release OryCun2 rn6 rn6, Rat, Jul. 2014, RGSC Rnor_6.0 rn5 rn5, Rat, Mar. 2012, RGSC Rnor_5.0 rn4 rn4, Rat, Nov. 2004, Baylor College of Medicine HGSC v3.4 rn3 rn3, Rat, Jun. 2003, Baylor College of Medicine HGSC v3.1 rheMac3 rheMac3, Rhesus, Oct. 2010, Beijing Genomics Institute CR_1.0 rheMac2 rheMac2, Rhesus, Jan. 2006, Baylor College of Medicine HGSC v1.0 Mmul_051212 proCap1 proCap1, Rock hyrax, Jul. 2008, Baylor College of Medicine HGSC Procap1.0 oviAri3 oviAri3, Sheep, Aug. 2012, ISGC Oar_v3.1 oviAri1 oviAri1, Sheep, Feb. 2010, ISGC Ovis aries 1.0 sorAra2 sorAra2, Shrew, Aug. 2008, Broad Institute SorAra2.0 sorAra1 sorAra1, Shrew, Jun. 2006, Broad Institute SorAra1.0 choHof1 choHof1, Sloth, Jul. 2008, Broad Institute ChoHof1.0 speTri2 speTri2, Squirrel, Nov. 2011, Broad Institute SpeTri2.0 saiBol1 saiBol1, Squirrel monkey, Oct. 2011, Broad Institute SaiBol1.0 tarSyr2 tarSyr2, Tarsier, Sep. 2013, WashU Tarsius_syrichta-2.0.1 tarSyr1 tarSyr1, Tarsier, Aug. 2008, WUSTL/Broad Institute Tarsyr1.0 sarHar1 sarHar1, Tasmanian devil, Feb. 2011, Wellcome Trust Sanger Institute Devil_refv7.0 echTel2 echTel2, Tenrec, Nov. 2012, Broad Institute EchTel2.0 echTel1 echTel1, Tenrec, Jul. 2005, Broad Institute echTel1 tupBel1 tupBel1, Tree shrew, Dec. 2006, Broad Institute Tupbel1.0 macEug2 macEug2, Wallaby, Sep. 2009, Tammar Wallaby Genome Sequencing Consortium Meug_1.1 cerSim1 cerSim1, White rhinoceros, May 2012, Broad Institute CerSimSim1.0 allMis1 allMis1, American alligator, Aug. 2012, Int. Crocodilian Genomes Working Group allMis0.2 gadMor1 gadMor1, Atlantic cod, May 2010, Genofisk GadMor_May2010 melUnd1 melUnd1, Budgerigar, Sep. 2011, WUSTL v6.3 galGal4 galGal4, Chicken, Nov. 2011, ICGC Gallus-gallus-4.0 galGal3 galGal3, Chicken, May 2006, WUSTL Gallus-gallus-2.1 galGal2 galGal2, Chicken, Feb. 2004, WUSTL Gallus-gallus-1.0 latCha1 latCha1, Coelacanth, Aug. 2011, Broad Institute LatCha1 calMil1 calMil1, Elephant shark, Dec. 2013, IMCB Callorhinchus_milli_6.1.3 fr3 fr3, Fugu, Oct. 2011, JGI v5.0 fr2 fr2, Fugu, Oct. 2004, JGI v4.0 fr1 fr1, Fugu, Aug. 2002, JGI v3.0 petMar2 petMar2, Lamprey, Sep. 2010, WUGSC 7.0 petMar1 petMar1, Lamprey, Mar. 2007, WUSTL v3.0 anoCar2 anoCar2, Lizard, May 2010, Broad Institute AnoCar2 anoCar1 anoCar1, Lizard, Feb. 2007, Broad Institute AnoCar1 oryLat2 oryLat2, Medaka, Oct. 2005, NIG v1.0 geoFor1 geoFor1, Medium ground finch, Apr. 2012, BGI GeoFor_1.0 / NCBI 13302 oreNil2 oreNil2, Nile tilapia, Jan. 2011, Broad Institute Release OreNil1.1 chrPic1 chrPic1, Painted turtle, Dec. 2011, IPTGSC Chrysemys_picta_bellii-3.0.1 gasAcu1 gasAcu1, Stickleback, Feb. 2006, Broad Institute Release 1.0 tetNig2 tetNig2, Tetraodon, Mar. 2007, Genoscope v7 tetNig1 tetNig1, Tetraodon, Feb. 2004, Genoscope v7 melGal1 melGal1, Turkey, Dec. 2009, Turkey Genome Consortium v2.01 xenTro7 xenTro7, X. tropicalis, Sep. 2012, JGI v.7.0 xenTro3 xenTro3, X. tropicalis, Nov. 2009, JGI v.4.2 xenTro2 xenTro2, X. tropicalis, Aug. 2005, JGI v.4.1 xenTro1 xenTro1, X. tropicalis, Oct. 2004, JGI v.3.0 taeGut2 taeGut2, Zebra finch, Feb. 2013, WashU taeGut324 taeGut1 taeGut1, Zebra finch, Jul. 2008, WUSTL v3.2.4 danRer10 danRer10, Zebrafish, Sep. 2014, Genome Reference Consortium GRCz10 danRer7 danRer7, Zebrafish, Jul. 2010, Sanger Institute Zv9 danRer6 danRer6, Zebrafish, Dec. 2008, Sanger Institute Zv8 danRer5 danRer5, Zebrafish, Jul. 2007, Sanger Institute Zv7 danRer4 danRer4, Zebrafish, Mar. 2006, Sanger Institute Zv6 danRer3 danRer3, Zebrafish, May 2005, Sanger Institute Zv5 ci2 ci2, C. intestinalis, Mar. 2005, JGI v2.0 ci1 ci1, C. intestinalis, Dec. 2002, JGI v1.0 braFlo1 braFlo1, Lancelet, Mar. 2006, JGI v1.0 strPur2 strPur2, S. purpuratus, Sep. 2006, Baylor College of Medicine HGSC v. Spur 2.1 strPur1 strPur1, S. purpuratus, Apr. 2005, Baylor College of Medicine HGSC v. Spur_0.5 apiMel2 apiMel2, A. mellifera, Jan. 2005, Baylor College of Medicine HGSC v.Amel_2.0 apiMel1 apiMel1, A. mellifera, Jul. 2004, Baylor College of Medicine HGSC v.Amel_1.2 anoGam1 anoGam1, A. gambiae, Feb. 2003, IAGP v.MOZ2 droAna2 droAna2, D. ananassae, Aug. 2005, Agencourt Arachne release droAna1 droAna1, D. ananassae, Jul. 2004, TIGR Celera release droEre1 droEre1, D. erecta, Aug. 2005, Agencourt Arachne release droGri1 droGri1, D. grimshawi, Aug. 2005, Agencourt Arachne release dm6 dm6, D. melanogaster, Aug. 2014, BDGP Release 6 + ISO1 MT dm3 dm3, D. melanogaster, Apr. 2006, BDGP Release 5 dm2 dm2, D. melanogaster, Apr. 2004, BDGP Release 4 dm1 dm1, D. melanogaster, Jan. 2003, BDGP Release 3 droMoj2 droMoj2, D. mojavensis, Aug. 2005, Agencourt Arachne release droMoj1 droMoj1, D. mojavensis, Aug. 2004, Agencourt Arachne release droPer1 droPer1, D. persimilis, Oct. 2005, Broad Institute release dp3 dp3, D. pseudoobscura, Nov. 2004, Flybase Release 1.0 dp2 dp2, D. pseudoobscura, Aug. 2003, Baylor College of Medicine HGSC Freeze 1 droSec1 droSec1, D. sechellia, Oct. 2005, Broad Institute Release 1.0 droSim1 droSim1, D. simulans, Apr. 2005, WUSTL Release 1.0 droVir2 droVir2, D. virilis, Aug. 2005, Agencourt Arachne release droVir1 droVir1, D. virilis, Jul. 2004, Agencourt Arachne release droYak2 droYak2, D. yakuba, Nov. 2005, WUSTL Release 2.0 droYak1 droYak1, D. yakuba, Apr. 2004, WUSTL Release 1.0 caePb2 caePb2, C. brenneri, Feb. 2008, WUSTL 6.0.1 caePb1 caePb1, C. brenneri, Jan. 2007, WUSTL 4.0 cb3 cb3, C. briggsae, Jan. 2007, WUSTL Cb3 cb1 cb1, C. briggsae, Jul. 2002, WormBase v. cb25.agp8 ce10 ce10, C. elegans, Oct. 2010, WormBase v. WS220 ce6 ce6, C. elegans, May 2008, WormBase v. WS190 ce4 ce4, C. elegans, Jan. 2007, WormBase v. WS170 ce2 ce2, C. elegans, Mar. 2004, WormBase v. WS120 caeJap1 caeJap1, C. japonica, Mar. 2008, WUSTL 3.0.2 caeRem3 caeRem3, C. remanei, May 2007, WUSTL 15.0.1 caeRem2 caeRem2, C. remanei, Mar. 2006, WUSTL 1.0 priPac1 priPac1, P. pacificus, Feb. 2007, WUSTL 5.0 aplCal1 aplCal1, Sea Hare, Sep. 2008, Broad Release Aplcal2.0 sacCer3 sacCer3, Yeast, April 2011, SGD April 2011 sequence sacCer2 sacCer2, Yeast, June 2008, SGD June 2008 sequence sacCer1 sacCer1, Yeast, Oct. 2003, SGD 1 Oct 2003 sequence eboVir3 eboVir3, Ebola Virus, June 2014, Sierra Leone 2014 (G3683/KM034562.1)