# HG changeset patch
# User mvdbeek
# Date 1456397258 18000
# Node ID f9b964d1d3860c50a8fb4a5610a3d77d118df05b
# Parent  a6198fc1116f025079460b0ae92be19b4bdbbacc
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty

diff -r a6198fc1116f -r f9b964d1d386 get_length_and_gc_content.r
--- a/get_length_and_gc_content.r	Thu Feb 25 05:45:51 2016 -0500
+++ b/get_length_and_gc_content.r	Thu Feb 25 05:47:38 2016 -0500
@@ -14,9 +14,9 @@
 parser <- OptionParser(usage = "%prog [options] file", option_list=option_list)
 args = parse_args(parser)
 
-GTFfile = args.gtf
-FASTAfile = args.fasta
-output = args.output
+GTFfile = args$gtf
+FASTAfile = args$fasta
+output = args$output
 
 #Load the annotation and reduce it
 GTF <- import.gff(GTFfile, format="gtf", genome=NA, asRangedData=F, feature.type="exon")