Mercurial > repos > mzhuang > chess_preprocessor

comparison chess_preprocessor.xml @ 2:43a20d0e2985 draft

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"planemo upload"
author mzhuang
date Sat, 25 Sep 2021 20:19:39 +0000
parents 0545899061d3
children 4419368c8287
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1:0545899061d3 2:43a20d0e2985
1 <tool id="chess_preprocessor" name="CHESS Pre-processing Tool" version="0.1.0"> 1 <tool id="chess_preprocessor" name="CHESS Preprocessing Tool" version="0.2.0">
2 <description>for pre-processing raw data</description> 2 <description>for pre-processing raw data</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.8.4">hexrd</requirement> 4 <requirement type="package" version="0.8.4">hexrd</requirement>
5 </requirements> 5 </requirements>
6 <command><![CDATA[ 6 <command><![CDATA[
10 ##source ~/.bashrc; conda activate __hexrd@0.8.0; 10 ##source ~/.bashrc; conda activate __hexrd@0.8.0;
11 mkdir -p output; 11 mkdir -p output;
12 cd output; 12 cd output;
13 ##set $history_id=$__app__.security.encode_id($output.creating_job.history.id) 13 ##set $history_id=$__app__.security.encode_id($output.creating_job.history.id)
14 ##echo '$history_id' >> '$output'; 14 ##echo '$history_id' >> '$output';
15 echo 'Hello World!' >> '$output';
15 16
16 #if $input_source_conditional.input_source == "input_source_history" 17 #if $input_source_conditional.input_source == "input_source_history"
17 #set $input_type = $input_source_conditional.input_type_conditional.input_type 18 #set $input_type = $input_source_conditional.input_type_conditional.input_type
18 #if $input_type == "single" 19 #if $input_type == "single"
19 #set $input_data = $input_source_conditional.input_type_conditional.fastq_input1 20 #set $input_data = $input_source_conditional.input_type_conditional.fastq_input1