view go_enrichment/test-data/output/GO_enrichment_cis/hotspot2_cis_GO_table.txt @ 0:7becbd7bf5d5 draft

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author nanettec
date Fri, 18 Mar 2016 05:29:58 -0400
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BP_GO.ID	"Term"	"Annotated"	"Significant"	"Expected"	"classicFisher.p.val"	"classicFisher.adj.p.val"	"p.val<0.05"	"p.val<0.01"	"adj.p.val<0.05"	"GeneIDs_significant"
"GO:0006486"	"protein glycosylation"	63	2	0.11	"0.0052"	1	"*"	"*"	""	"A_92_P013928;A_92_P024307"
"GO:0009100"	"glycoprotein metabolic process"	63	2	0.11	"0.0052"	1	"*"	"*"	""	"A_92_P013928;A_92_P024307"
"GO:0009101"	"glycoprotein biosynthetic process"	63	2	0.11	"0.0052"	1	"*"	"*"	""	"A_92_P013928;A_92_P024307"
"GO:0043413"	"macromolecule glycosylation"	63	2	0.11	"0.0052"	1	"*"	"*"	""	"A_92_P013928;A_92_P024307"
"GO:0070085"	"glycosylation"	71	2	0.12	"0.0065"	1	"*"	"*"	""	"A_92_P013928;A_92_P024307"
"GO:0034645"	"cellular macromolecule biosynthetic proc..."	2056	8	3.54	"0.0165"	1	"*"	""	""	"A_92_P007586;A_92_P011760;A_92_P013928;A_92_P015153;A_92_P016260;A_92_P019496;A_92_P024307;A_92_P027578"
"GO:0009059"	"macromolecule biosynthetic process"	2059	8	3.54	"0.0167"	1	"*"	""	""	"A_92_P007586;A_92_P011760;A_92_P013928;A_92_P015153;A_92_P016260;A_92_P019496;A_92_P024307;A_92_P027578"
"GO:0006487"	"protein N-linked glycosylation"	13	1	0.02	"0.0222"	1	"*"	""	""	"A_92_P024307"
"GO:0016569"	"covalent chromatin modification"	18	1	0.03	"0.0306"	1	"*"	""	""	"A_92_P016260"
"GO:0016570"	"histone modification"	18	1	0.03	"0.0306"	1	"*"	""	""	"A_92_P016260"
"GO:0043170"	"macromolecule metabolic process"	5113	13	8.8	"0.0518"	1	""	""	""	"A_92_P002418;A_92_P007586;A_92_P011760;A_92_P013928;A_92_P015153;A_92_P016260;A_92_P019496;A_92_P019820;A_92_P022119;A_92_P024307;A_92_P027578;A_92_P032219;A_92_P034803"
"GO:0016568"	"chromatin modification"	38	1	0.07	"0.0635"	1	""	""	""	"A_92_P016260"
"GO:0032313"	"regulation of Rab GTPase activity"	41	1	0.07	"0.0683"	1	""	""	""	"A_92_P039188"
"GO:0032482"	"Rab protein signal transduction"	41	1	0.07	"0.0683"	1	""	""	""	"A_92_P039188"
"GO:0032483"	"regulation of Rab protein signal transdu..."	41	1	0.07	"0.0683"	1	""	""	""	"A_92_P039188"
"GO:0019538"	"protein metabolic process"	3235	9	5.57	"0.0779"	1	""	""	""	"A_92_P002418;A_92_P011760;A_92_P013928;A_92_P016260;A_92_P019820;A_92_P022119;A_92_P024307;A_92_P032219;A_92_P034803"
"GO:0009719"	"response to endogenous stimulus"	50	1	0.09	"0.0827"	1	""	""	""	"A_92_P015153"
"GO:0009725"	"response to hormone stimulus"	50	1	0.09	"0.0827"	1	""	""	""	"A_92_P015153"
"GO:0010033"	"response to organic substance"	50	1	0.09	"0.0827"	1	""	""	""	"A_92_P015153"
"GO:0015850"	"organic alcohol transport"	56	1	0.1	"0.0922"	1	""	""	""	"A_92_P010334"

MF_GO.ID	"Term"	"Annotated"	"Significant"	"Expected"	"classicFisher.p.val"	"classicFisher.adj.p.val"	"p.val<0.05"	"p.val<0.01"	"adj.p.val<0.05"	"GeneIDs_significant"
"GO:0004415"	"hyalurononglucosaminidase activity"	1	1	0	"0.0015"	1	"*"	"*"	""	"A_92_P011760"
"GO:0004017"	"adenylate kinase activity"	2	1	0	"0.0030"	1	"*"	"*"	""	"A_92_P019496"
"GO:0003830"	"beta-1,4-mannosylglycoprotein 4-beta-N-a..."	7	1	0.01	"0.0105"	1	"*"	""	""	"A_92_P024307"
"GO:0015929"	"hexosaminidase activity"	10	1	0.02	"0.0150"	1	"*"	""	""	"A_92_P011760"
"GO:0019201"	"nucleotide kinase activity"	15	1	0.02	"0.0224"	1	"*"	""	""	"A_92_P019496"
"GO:0031072"	"heat shock protein binding"	184	2	0.28	"0.0311"	1	"*"	""	""	"A_92_P002418;A_92_P030677"
"GO:0008375"	"acetylglucosaminyltransferase activity"	28	1	0.04	"0.0414"	1	"*"	""	""	"A_92_P024307"
"GO:0016776"	"phosphotransferase activity, phosphate g..."	28	1	0.04	"0.0414"	1	"*"	""	""	"A_92_P019496"
"GO:0010181"	"FMN binding"	35	1	0.05	"0.0515"	1	""	""	""	"A_92_P009352"
"GO:0008378"	"galactosyltransferase activity"	36	1	0.05	"0.0530"	1	""	""	""	"A_92_P013928"
"GO:0005097"	"Rab GTPase activator activity"	41	1	0.06	"0.0601"	1	""	""	""	"A_92_P039188"
"GO:0005099"	"Ras GTPase activator activity"	41	1	0.06	"0.0601"	1	""	""	""	"A_92_P039188"
"GO:0004177"	"aminopeptidase activity"	45	1	0.07	"0.0658"	1	""	""	""	"A_92_P034803"
"GO:0019205"	"nucleobase-containing compound kinase ac..."	53	1	0.08	"0.0771"	1	""	""	""	"A_92_P019496"
"GO:0008493"	"tetracycline transporter activity"	56	1	0.08	"0.0812"	1	""	""	""	"A_92_P010334"
"GO:0015307"	"drug:hydrogen antiporter activity"	56	1	0.08	"0.0812"	1	""	""	""	"A_92_P010334"
"GO:0015520"	"tetracycline:hydrogen antiporter activit..."	56	1	0.08	"0.0812"	1	""	""	""	"A_92_P010334"
"GO:0042895"	"antibiotic transporter activity"	56	1	0.08	"0.0812"	1	""	""	""	"A_92_P010334"
"GO:0016758"	"transferase activity, transferring hexos..."	329	2	0.5	"0.0874"	1	""	""	""	"A_92_P013928;A_92_P024307"
"GO:0015298"	"solute:cation antiporter activity"	72	1	0.11	"0.1033"	1	""	""	""	"A_92_P010334"

CC_GO.ID	"Term"	"Annotated"	"Significant"	"Expected"	"classicFisher.p.val"	"classicFisher.adj.p.val"	"p.val<0.05"	"p.val<0.01"	"adj.p.val<0.05"	"GeneIDs_significant"
"GO:0016602"	"CCAAT-binding factor complex"	8	1	0.01	"0.014"	1	"*"	""	""	"A_92_P007586"
"GO:0005634"	"nucleus"	1522	6	2.71	"0.034"	1	"*"	""	""	"A_92_P007586;A_92_P011352;A_92_P015153;A_92_P015576;A_92_P016260;A_92_P027578"
"GO:0005667"	"transcription factor complex"	38	1	0.07	"0.066"	1	""	""	""	"A_92_P007586"
"GO:0005654"	"nucleoplasm"	57	1	0.1	"0.097"	1	""	""	""	"A_92_P007586"
"GO:0044451"	"nucleoplasm part"	57	1	0.1	"0.097"	1	""	""	""	"A_92_P007586"
"GO:0043227"	"membrane-bounded organelle"	1994	6	3.56	"0.112"	1	""	""	""	"A_92_P007586;A_92_P011352;A_92_P015153;A_92_P015576;A_92_P016260;A_92_P027578"
"GO:0043231"	"intracellular membrane-bounded organelle"	1994	6	3.56	"0.112"	1	""	""	""	"A_92_P007586;A_92_P011352;A_92_P015153;A_92_P015576;A_92_P016260;A_92_P027578"
"GO:0031981"	"nuclear lumen"	79	1	0.14	"0.132"	1	""	""	""	"A_92_P007586"
"GO:0043233"	"organelle lumen"	92	1	0.16	"0.152"	1	""	""	""	"A_92_P007586"
"GO:0070013"	"intracellular organelle lumen"	92	1	0.16	"0.152"	1	""	""	""	"A_92_P007586"
"GO:0031974"	"membrane-enclosed lumen"	100	1	0.18	"0.165"	1	""	""	""	"A_92_P007586"
"GO:0043226"	"organelle"	2774	7	4.95	"0.181"	1	""	""	""	"A_92_P007586;A_92_P011352;A_92_P011760;A_92_P015153;A_92_P015576;A_92_P016260;A_92_P027578"
"GO:0043229"	"intracellular organelle"	2774	7	4.95	"0.181"	1	""	""	""	"A_92_P007586;A_92_P011352;A_92_P011760;A_92_P015153;A_92_P015576;A_92_P016260;A_92_P027578"
"GO:0044428"	"nuclear part"	113	1	0.2	"0.184"	1	""	""	""	"A_92_P007586"
"GO:0044424"	"intracellular part"	3621	7	6.46	"0.493"	1	""	""	""	"A_92_P007586;A_92_P011352;A_92_P011760;A_92_P015153;A_92_P015576;A_92_P016260;A_92_P027578"
"GO:0005840"	"ribosome"	479	1	0.85	"0.588"	1	""	""	""	"A_92_P011760"
"GO:0005622"	"intracellular"	4386	8	7.82	"0.589"	1	""	""	""	"A_92_P007586;A_92_P011352;A_92_P011760;A_92_P015153;A_92_P015576;A_92_P016260;A_92_P027578;A_92_P039188"
"GO:0030529"	"ribonucleoprotein complex"	528	1	0.94	"0.625"	1	""	""	""	"A_92_P011760"
"GO:0005623"	"cell"	4572	8	8.15	"0.668"	1	""	""	""	"A_92_P007586;A_92_P011352;A_92_P011760;A_92_P015153;A_92_P015576;A_92_P016260;A_92_P027578;A_92_P039188"
"GO:0044464"	"cell part"	4572	8	8.15	"0.668"	1	""	""	""	"A_92_P007586;A_92_P011352;A_92_P011760;A_92_P015153;A_92_P015576;A_92_P016260;A_92_P027578;A_92_P039188"