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comparison trinityrnaseq.xml @ 5:1de64ac61b4e draft default tip

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author nate
date Thu, 04 May 2017 14:16:09 -0400
parents f98f80675d60
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4:f98f80675d60 5:1de64ac61b4e
17 workdir=`pwd`; 17 workdir=`pwd`;
18 echo "workdir is \$workdir"; 18 echo "workdir is \$workdir";
19 cd \$LOCAL; 19 cd \$LOCAL;
20 echo "Running Trinity from `pwd`"; 20 echo "Running Trinity from `pwd`";
21 21
22 Trinity --max_memory "\${MEM}G" 22 Trinity --no_version_check
23 --max_memory "\${MEM}G"
23 --CPU "\${GALAXY_SLOTS:-16}" 24 --CPU "\${GALAXY_SLOTS:-16}"
24 --bflyHeapSpaceMax "32G" 25 --bflyHeapSpaceMax "32G"
25 --bflyHeapSpaceInit "2G" 26 --bflyHeapSpaceInit "2G"
26 --bflyGCThreads "6" 27 --bflyGCThreads "6"
27 28