Mercurial > repos > nate > trinity_psc

comparison trinityrnaseq.xml @ 3:3d072b99688e draft

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author nate
date Mon, 26 Sep 2016 16:10:07 -0400
parents 53b890343b67
children f98f80675d60
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2:53b890343b67 3:3d072b99688e
113 <when value="yes"> 113 <when value="yes">
114 <param name="min_kmer_cov" type="integer" value="1" min="1" label="inchworm_min_kmer_cov" help="Minimum kmer coverage required by Inchworm for initial contig construction" /> 114 <param name="min_kmer_cov" type="integer" value="1" min="1" label="inchworm_min_kmer_cov" help="Minimum kmer coverage required by Inchworm for initial contig construction" />
115 <param name="max_reads_per_graph" type="integer" value="20000000" min="10000" label="chrysalis_max_reads_per_graph" help="Maximum number of reads to be anchored within each transcript graph by Chrysalis" /> 115 <param name="max_reads_per_graph" type="integer" value="20000000" min="10000" label="chrysalis_max_reads_per_graph" help="Maximum number of reads to be anchored within each transcript graph by Chrysalis" />
116 <param name="bfly_opts" type="text" value="None" label="bfly_opts" help="Options to pass on to Butterfly" /> 116 <param name="bfly_opts" type="text" value="None" label="bfly_opts" help="Options to pass on to Butterfly" />
117 <param name="min_contig_length" type="integer" value="200" min="1" label="Minimum Contig Length" help=""/> 117 <param name="min_contig_length" type="integer" value="200" min="1" label="Minimum Contig Length" help=""/>
118 <param name="min_contig_length" type="integer" value="200" min="1" label="Minimum Contig Length" help=""/>
119 <param name="normalize_reads" type="boolean" truevalue="yes" falsevalue="no" help="(--normalize_reads) Normalize reads, can decrease runtime and memory requirements for datasets exceeding 300M pairs"/> 118 <param name="normalize_reads" type="boolean" truevalue="yes" falsevalue="no" help="(--normalize_reads) Normalize reads, can decrease runtime and memory requirements for datasets exceeding 300M pairs"/>
120 </when> 119 </when>
121 </conditional> 120 </conditional>
122 </inputs> 121 </inputs>
123 <outputs> 122 <outputs>