Mercurial > repos > nathandunn > biolinkmonarchinitiative

comparison bioentity-associations.xml @ 0:4f6fba8332ec draft

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planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
author nathandunn
date Wed, 21 Jun 2017 18:42:56 -0400
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children 88e1bd76b069
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-1:000000000000 0:4f6fba8332ec
1 <tool id="monarch-bioentity-associations" name="Bioentity Associations" version="0.1.0">
2 <requirements/>
3 <stdio>
4 <exit_code range="1:" />
5 </stdio>
6 <command><![CDATA[
7 curl -X GET --header 'Accept: application/json' 'https://api.monarchinitiative.org/api/bioentity/$input/associations/?rows=$rows&fetch_objects=true' > $output
8 ]]></command>
9 <inputs>
10 <param name="input" type="text" format="txt" multiple="false" label="Bioentity ID (e.g. ZFIN:ZDB-ALT-010427-8)" />
11 <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/>
12 </inputs>
13 <outputs>
14 <data name="output" format="json" />
15 </outputs>
16 <tests>
17 <test>
18 <param name="input" value="ZFIN:ZDB-ALT-010427-8"/>
19 <output name="output" file="associations-for-variant.json"/>
20 </test>
21 </tests>
22 <help><![CDATA[
23 Pulls data from Monarch Initiative BioLink API web services as JSON.
24 https://api.monarchinitiative.org/api/
25 ]]></help>
26 <citations>
27 <citation type="doi">doi:10.5281/zenodo.56412</citation>
28 </citations>
29 </tool>
30