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annotate bioentity-associations.xml @ 1:66ece4fd024f draft default tip

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author nathandunn
date Wed, 28 Jun 2017 10:27:08 -0400
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1 <tool id="planteome-bioentity-associations" name="Bioentity Associations" version="0.1.0">
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2 <macros>
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3 <import>macros.xml</import>
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4 </macros>
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5 <expand macro="frontmatter" />
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6 <command><![CDATA[
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7 curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/api/bioentity/$input/associations/?rows=$rows&fetch_objects=true' > $output
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8 ]]></command>
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9 <inputs>
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10 <param name="input" type="text" format="txt" multiple="false" label="Bioentity ID (e.g. EnsemblPlants:GRMZM2G061969_T01)" />
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11 <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/>
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12 </inputs>
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13 <expand macro="outputs" />
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14 <tests>
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15 <test>
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16 <param name="input" value="EnsemblPlants:GRMZM2G061969_T01"/>
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17 <output name="output" file="associations-for-variant.json"/>
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18 </test>
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19 </tests>
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20 <expand macro="citations" />
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21 </tool>
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