Mercurial > repos > nathandunn > biolinkplanteome

comparison bioentity-associations.xml @ 0:028a3ffc17b4 draft

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planemo upload commit b095175f34e78ceded24a6e1da99b328f50db86d
author nathandunn
date Fri, 23 Jun 2017 15:04:12 -0400
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children 66ece4fd024f
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-1:000000000000 0:028a3ffc17b4
1 <tool id="planteome-bioentity-associations" name="Bioentity Associations" version="0.1.0">
2 <macros>
3 <import>macros.xml</import>
4 </macros>
5 <expand macro="frontmatter" />
6 <command><![CDATA[
7 curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/$input/associations/?rows=$rows&fetch_objects=true' > $output
8 ]]></command>
9 <inputs>
10 <param name="input" type="text" format="txt" multiple="false" label="Bioentity ID (e.g. ZFIN:ZDB-ALT-010427-8)" />
11 <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/>
12 </inputs>
13 <expand macro="outputs" />
14 <tests>
15 <test>
16 <param name="input" value="ZFIN:ZDB-ALT-010427-8"/>
17 <output name="output" file="associations-for-variant.json"/>
18 </test>
19 </tests>
20 <expand macro="citations" />
21 </tool>
22