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comparison bulk-operations.xml @ 1:66ece4fd024f draft default tip

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planemo upload commit 20eeb677e99874173440a365f2db04e315e7ebed
author nathandunn
date Wed, 28 Jun 2017 10:27:08 -0400
parents 028a3ffc17b4
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0:028a3ffc17b4 1:66ece4fd024f
2 <macros> 2 <macros>
3 <import>macros.xml</import> 3 <import>macros.xml</import>
4 </macros> 4 </macros>
5 <expand macro="frontmatter" /> 5 <expand macro="frontmatter" />
6 <command><![CDATA[ 6 <command><![CDATA[
7 curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/mart/$association/$object_category/$taxon?rows=$rows&fetch_objects=true' > $output 7 curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/api/mart/$association/$object_category/$taxon?rows=$rows&fetch_objects=true' > $output
8 ]]></command> 8 ]]></command>
9 <inputs> 9 <inputs>
10 <param name="taxon" type="text" format="txt" multiple="false" label="Taxon (e.g. NCBITaxon:9606)"/> 10 <param name="taxon" type="text" format="txt" multiple="false" label="Taxon (e.g. NCBITaxon:4530)"/>
11 <param name="object_category" type="text" format="txt" multiple="false" label="Object Category (e.g. phenotype, disease)"/> 11 <param name="object_category" type="text" format="txt" multiple="false" label="Object Category (e.g. phenotype)"/>
12 <param name="association" type="select" multiple="false" display="radio" label="Type"> 12 <param name="association" type="select" multiple="false" display="radio" label="Type">
13 <option value="gene">Gene</option> 13 <option value="gene">Gene</option>
14 <option value="disease">Disease</option> 14 <!--<option value="disease">Disease</option>-->
15 <option value="case">Case</option> 15 <!--<option value="case">Case</option>-->
16 </param> 16 </param>
17 <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/> 17 <param name="rows" type="text" format="txt" multiple="false" value="10" label="Num Rows"/>
18 </inputs> 18 </inputs>
19 <expand macro="outputs" /> 19 <expand macro="outputs" />
20 <tests> 20 <tests>
21 <!--NOTE: these take way too long to run because fo the large amount of data involved--> 21 <!--NOTE: these take way too long to run because fo the large amount of data involved-->
22 <!--<test>--> 22 <!--<test>-->