Mercurial > repos > nathandunn > biolinkplanteome

comparison disease-associations.xml @ 1:66ece4fd024f draft default tip

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planemo upload commit 20eeb677e99874173440a365f2db04e315e7ebed
author nathandunn
date Wed, 28 Jun 2017 10:27:08 -0400
parents 028a3ffc17b4
children
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0:028a3ffc17b4 1:66ece4fd024f
2 <macros> 2 <macros>
3 <import>macros.xml</import> 3 <import>macros.xml</import>
4 </macros> 4 </macros>
5 <expand macro="frontmatter" /> 5 <expand macro="frontmatter" />
6 <command><![CDATA[ 6 <command><![CDATA[
7 curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/disease/$input/$association/?rows=$rows&fetch_objects=true' > $output 7 curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/api/bioentity/disease/$input/$association/?rows=$rows&fetch_objects=true' > $output
8 ]]></command> 8 ]]></command>
9 <inputs> 9 <inputs>
10 <param name="input" type="text" format="txt" multiple="false" label="Disease (e.g. OMIM:605543, DOID:678)" /> 10 <param name="input" type="text" format="txt" multiple="false" label="Disease (e.g. GO:0033365)" />
11 <param name="association" type="select" multiple="false" display="radio" label="Type"> 11 <param name="association" type="select" multiple="false" display="radio" label="Type">
12 <option value="genes">Genes</option> 12 <option value="genes">Genes</option>
13 <option value="models">Models</option> 13 <option value="models">Models</option>
14 <option value="phenotypes">Phenotypes</option> 14 <option value="phenotypes">Phenotypes</option>
15 </param> 15 </param>
16 <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/> 16 <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/>
17 </inputs> 17 </inputs>
18 <expand macro="outputs" /> 18 <expand macro="outputs" />
19 <tests> 19 <tests>
20 <test> 20 <test>
21 <param name="input" value="OMIM:605543"/> 21 <param name="input" value="GO:0033365"/>
22 <param name="association" value="genes"/> 22 <param name="association" value="genes"/>
23 <output name="output" file="genes-for-disease.json"/> 23 <output name="output" file="genes-for-disease.json"/>
24 </test> 24 </test>
25 <test> 25 <test>
26 <param name="input" value="OMIM:605543"/> 26 <param name="input" value="GO:0033365"/>
27 <param name="association" value="models"/> 27 <param name="association" value="models"/>
28 <output name="output" file="models-for-disease.json"/> 28 <output name="output" file="models-for-disease.json"/>
29 </test> 29 </test>
30 <test> 30 <test>
31 <param name="input" value="OMIM:605543"/> 31 <param name="input" value="GO:0033365"/>
32 <param name="association" value="phenotypes"/> 32 <param name="association" value="phenotypes"/>
33 <output name="output" file="phenotypes-for-disease.json"/> 33 <output name="output" file="phenotypes-for-disease.json"/>
34 </test> 34 </test>
35 </tests> 35 </tests>
36 <expand macro="citations" /> 36 <expand macro="citations" />