Mercurial > repos > nathandunn > biolinkplanteome

comparison bioentity-associations.xml @ 1:66ece4fd024f draft default tip

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planemo upload commit 20eeb677e99874173440a365f2db04e315e7ebed
author nathandunn
date Wed, 28 Jun 2017 10:27:08 -0400
parents 028a3ffc17b4
children
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0:028a3ffc17b4 1:66ece4fd024f
2 <macros> 2 <macros>
3 <import>macros.xml</import> 3 <import>macros.xml</import>
4 </macros> 4 </macros>
5 <expand macro="frontmatter" /> 5 <expand macro="frontmatter" />
6 <command><![CDATA[ 6 <command><![CDATA[
7 curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/$input/associations/?rows=$rows&fetch_objects=true' > $output 7 curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/api/bioentity/$input/associations/?rows=$rows&fetch_objects=true' > $output
8 ]]></command> 8 ]]></command>
9 <inputs> 9 <inputs>
10 <param name="input" type="text" format="txt" multiple="false" label="Bioentity ID (e.g. ZFIN:ZDB-ALT-010427-8)" /> 10 <param name="input" type="text" format="txt" multiple="false" label="Bioentity ID (e.g. EnsemblPlants:GRMZM2G061969_T01)" />
11 <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/> 11 <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/>
12 </inputs> 12 </inputs>
13 <expand macro="outputs" /> 13 <expand macro="outputs" />
14 <tests> 14 <tests>
15 <test> 15 <test>
16 <param name="input" value="ZFIN:ZDB-ALT-010427-8"/> 16 <param name="input" value="EnsemblPlants:GRMZM2G061969_T01"/>
17 <output name="output" file="associations-for-variant.json"/> 17 <output name="output" file="associations-for-variant.json"/>
18 </test> 18 </test>
19 </tests> 19 </tests>
20 <expand macro="citations" /> 20 <expand macro="citations" />
21 </tool> 21 </tool>