Mercurial > repos > nathandunn > biolinkplanteome
diff disease-associations.xml @ 0:028a3ffc17b4 draft
planemo upload commit b095175f34e78ceded24a6e1da99b328f50db86d
author | nathandunn |
---|---|
date | Fri, 23 Jun 2017 15:04:12 -0400 |
parents | |
children | 66ece4fd024f |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/disease-associations.xml Fri Jun 23 15:04:12 2017 -0400 @@ -0,0 +1,37 @@ +<tool id="planteome-disease-associations" name="Disease Associations" version="0.1.0"> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="frontmatter" /> + <command><![CDATA[ +curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/disease/$input/$association/?rows=$rows&fetch_objects=true' > $output + ]]></command> + <inputs> + <param name="input" type="text" format="txt" multiple="false" label="Disease (e.g. OMIM:605543, DOID:678)" /> + <param name="association" type="select" multiple="false" display="radio" label="Type"> + <option value="genes">Genes</option> + <option value="models">Models</option> + <option value="phenotypes">Phenotypes</option> + </param> + <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/> + </inputs> + <expand macro="outputs" /> + <tests> + <test> + <param name="input" value="OMIM:605543"/> + <param name="association" value="genes"/> + <output name="output" file="genes-for-disease.json"/> + </test> + <test> + <param name="input" value="OMIM:605543"/> + <param name="association" value="models"/> + <output name="output" file="models-for-disease.json"/> + </test> + <test> + <param name="input" value="OMIM:605543"/> + <param name="association" value="phenotypes"/> + <output name="output" file="phenotypes-for-disease.json"/> + </test> + </tests> + <expand macro="citations" /> +</tool>