Mercurial > repos > nathandunn > biolinkplanteome
diff get-object.xml @ 1:66ece4fd024f draft default tip
planemo upload commit 20eeb677e99874173440a365f2db04e315e7ebed
| author | nathandunn |
|---|---|
| date | Wed, 28 Jun 2017 10:27:08 -0400 |
| parents | 028a3ffc17b4 |
| children |
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--- a/get-object.xml Fri Jun 23 15:04:12 2017 -0400 +++ b/get-object.xml Wed Jun 28 10:27:08 2017 -0400 @@ -4,14 +4,14 @@ </macros> <expand macro="frontmatter" /> <command><![CDATA[ -curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/$type$input$associations?rows=$rows&fetch_objects=true' > $output +curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/api/bioentity/$type$input$associations?rows=$rows&fetch_objects=true' > $output ]]></command> <inputs> <param name="input" type="text" format="txt" multiple="false" label="Object ID" /> <param name="type" type="select" multiple="false" display="radio" label="Type"> <option value="">Any</option> - <option value="gene/">Gene (e.g. NCBIGene:84570)</option> - <option value="genotype/">Genotype (e.g. ZFIN:ZDB-FISH-150901-6607)</option> + <option value="gene/">Gene (e.g. MaizeGDB:9024907)</option> + <!--<option value="genotype/">Genotype (e.g. ZFIN:ZDB-FISH-150901-6607)</option>--> </param> <param name="associations" type="select" multiple="false" display="radio" label="Render Associations"> <option value="/associations/">True</option> @@ -22,23 +22,23 @@ <expand macro="outputs" /> <tests> <test> - <param name="input" value="OMIM:605543"/> + <param name="input" value="MaizeGDB:9024907"/> <param name="type" value=""/> <output name="output" file="bioentity-object-for-disease.json"/> </test> <test> - <param name="input" value="OMIM:605543"/> + <param name="input" value="MaizeGDB:9024907"/> <param name="type" value=""/> <param name="associations" value="/associations/"/> <output name="output" file="bioentity-associations-for-disease.json"/> </test> <test> - <param name="input" value="NCBIGene:84570"/> + <param name="input" value="MaizeGDB:9024907"/> <param name="association" value="gene/"/> <output name="output" file="bioentity-object-for-gene.json"/> </test> <test> - <param name="input" value="ZFIN:ZDB-FISH-150901-6607"/> + <param name="input" value="MaizeGDB:9024907"/> <param name="association" value="genotype/"/> <output name="output" file="bioentity-object-for-genotype.json"/> </test>