Mercurial > repos > nathandunn > biolinkplanteome
diff substance-associations.xml @ 1:66ece4fd024f draft default tip
planemo upload commit 20eeb677e99874173440a365f2db04e315e7ebed
| author | nathandunn |
|---|---|
| date | Wed, 28 Jun 2017 10:27:08 -0400 |
| parents | 028a3ffc17b4 |
| children |
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--- a/substance-associations.xml Fri Jun 23 15:04:12 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,39 +0,0 @@ -<tool id="planteome-substance-associations" name="Substance Associations" version="0.1.0"> - <macros> - <import>macros.xml</import> - </macros> - <expand macro="frontmatter" /> - <command><![CDATA[ -curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/substance/$input/$association/?rows=$rows&fetch_objects=true' > $output - ]]></command> - <inputs> - <param name="input" type="text" format="txt" multiple="false" label="Substance (e.g. CHEBI:40036)" /> - <param name="association" type="select" multiple="false" display="radio" label="Type"> - <option value="participant_in">Participant In</option> - <option value="roles">Roles</option> - <!--<option value="treats">Treats</option>--> - </param> - <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/> - </inputs> - <expand macro="outputs" /> - <tests> - <test> - <param name="input" value="CHEBI:40036"/> - <param name="association" value="participant_in"/> - <output name="output" file="participatant_in-for-substance.json"/> - </test> - <test> - <param name="input" value="CHEBI:40036"/> - <param name="association" value="roles"/> - <output name="output" file="roles-for-substance.json"/> - </test> - <!--seems to break--> - <!--<test>--> - <!--<param name="input" value="CHEBI:40036"/>--> - <!--<param name="association" value="treats"/>--> - <!--<output name="output" file="treats-for-substance.json"/>--> - <!--</test>--> - </tests> - <expand macro="citations" /> -</tool> -