Mercurial > repos > nathandunn > biolinkplanteome
view variant-associations.xml @ 0:028a3ffc17b4 draft
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author | nathandunn |
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date | Fri, 23 Jun 2017 15:04:12 -0400 |
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<tool id="planteome-variant-associations" name="Variant Associations" version="0.1.0"> <macros> <import>macros.xml</import> </macros> <expand macro="frontmatter" /> <command><![CDATA[ curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/variant/$input/$association/?rows=$rows&fetch_objects=true' > $output ]]></command> <inputs> <param name="input" type="text" format="txt" multiple="false" label="Variant (e.g. ZFIN:ZDB-ALT-010427-8, ClinVarVariant:39783)" /> <param name="association" type="select" multiple="false" display="radio" label="Type"> <option value="genes">Genes</option> <option value="genotypes">Genotypes</option> <option value="phenotypes">Phenotypes</option> </param> <param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/> </inputs> <expand macro="outputs" /> <tests> <test> <param name="input" value="ZFIN:ZDB-ALT-010427-8"/> <param name="association" value="genes"/> <output name="output" file="genes-for-variant.json"/> </test> <test> <param name="input" value="ZFIN:ZDB-ALT-010427-8"/> <param name="association" value="genotypes"/> <output name="output" file="genotypes-for-variant.json"/> </test> <test> <param name="input" value="ClinVarVariant:65929"/> <param name="association" value="phenotypes"/> <output name="output" file="phenotypes-for-variant.json"/> </test> </tests> <expand macro="citations" /> </tool>