Mercurial > repos > nedias > orf_tools
changeset 8:e5616d5101c0 draft default tip
Bug fix - Null strand give index out of bound error
| author | nedias |
|---|---|
| date | Wed, 19 Oct 2016 14:24:31 -0400 |
| parents | 0eda2c588bcd |
| children | |
| files | ORFFinder.py |
| diffstat | 1 files changed, 8 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/ORFFinder.py Wed Oct 12 18:13:02 2016 -0400 +++ b/ORFFinder.py Wed Oct 19 14:24:31 2016 -0400 @@ -109,8 +109,14 @@ # The longest pair of each strand is store in the last position of the pair list, # so just pull it out directly - pos_longest = pairs[-1][1] - pairs[-1][0] - rev_longest = rev_pairs[-1][1] - rev_pairs[-1][0] + if len(pairs) > 1: + pos_longest = pairs[-1][1] - pairs[-1][0] + else: + pos_longest = 0 + if len(rev_pairs) > 1: + rev_longest = rev_pairs[-1][1] - rev_pairs[-1][0] + else: + rev_longest = 0 return max(pos_longest, rev_longest)