# HG changeset patch
# User ngsplot
# Date 1426799889 14400
# Node ID 664fbd8919f32178aa90ed6a84ded6e809b5db0a
# Parent  5621523bbe56b1d33c9018268752ea97ea4e4f09
Uploaded

diff -r 5621523bbe56 -r 664fbd8919f3 ngsplot_galaxytoolshed_v1.0/ngsplot_intro/intro.xml
--- a/ngsplot_galaxytoolshed_v1.0/ngsplot_intro/intro.xml	Thu Mar 19 16:51:28 2015 -0400
+++ b/ngsplot_galaxytoolshed_v1.0/ngsplot_intro/intro.xml	Thu Mar 19 17:18:09 2015 -0400
@@ -3,16 +3,6 @@
 
 </command>
 
-#if $numsamples.numsamples2 == "1":
-   runNGSplot.pl 
-   $genome_name 
-
-#else if $numsamples.numsamples2 == "5":
-   runNGSplot.pl 
-   $genome_name 
-
-#end if:
-
 <!--
 <inputs>
    <param  type="text" value="mm9" name="genome_name" label="Intro Text here..." help="" >
@@ -56,12 +46,13 @@
 
 ngs.plot is developed by Drs. Li Shen, Ningyi Shao and Xiaochuan Liu at the Icahn School of Medicine at Mount Sinai. If you have technical questions about ngs.plot, please use the discussion forum. For collaborations or any other matters, use: li.shen AT mssm.edu.
 
+-----
+
+**Galaxy Toolshed Installation
+
+Please note that the Galaxy Toolshed implementation of ngs.plot requires ngs.plot v2.47.1 to be already installed on your system. For instructions on the system installation of ngs.plot, please see https://code.google.com/p/ngsplot/.
+
 </help>
 <outputs>
-<!--
-   <data format="pdf" name="out_avg_png" />
-   <data format="pdf" name="out_hm_png" />
-   <data format="zip" name="out_zip"/>
--->
 </outputs>
 </tool>