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annotate tests/real-mit.csv.out @ 6:df3b28364cd2

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allele-counts.{py,xml}: Add strand bias, documentation updates.
author nicksto <nmapsy@gmail.com>
date Wed, 09 Dec 2015 11:20:51 -0500
parents 31361191d2d2
children 411adeff1eec
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1 #SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC.
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2 S1 chrM 2000 8 14903 1 1 14913 1 C A 0.00054
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3 S3 chrM 2000 10 13175 1 6 13192 1 C A 0.00076
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4 S1 chrM 3000 27966 42 44 12 28064 0 A G 0.00157
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5 S2 chrM 3000 20472 16 36 4 20528 1 A G 0.00175
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6 S3 chrM 3000 30267 40 46 10 30363 0 A G 0.00152
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7 S4 chrM 3000 15494 17 29 3 15543 0 A G 0.00187
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8 S1 chrM 4000 12258 3 2 4 12267 1 A T 0.00033
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9 S1 chrM 7000 4 26 3 13745 13778 0 T C 0.00189
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10 S2 chrM 7000 0 16 6 11392 11414 1 T C 0.0014
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11 S3 chrM 7000 4 13 10 13952 13979 1 T C 0.00093
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12 S3 chrM 8000 4 1 10066 3 10074 1 G A 0.0004