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annotate tests/real-nofilt.csv.out @ 6:df3b28364cd2

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allele-counts.{py,xml}: Add strand bias, documentation updates.
author nicksto <nmapsy@gmail.com>
date Wed, 09 Dec 2015 11:20:51 -0500
parents 31361191d2d2
children 411adeff1eec
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1 #SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC.
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2 THYROID chr1 246704250 29 0 0 0 29 1 A . 0.0
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3 THYROID chr1 246704257 0 0 0 71 71 1 T . 0.0
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4 THYROID chr1 246704268 104 0 0 0 104 1 A . 0.0
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5 THYROID chr1 246704269 0 0 0 105 105 1 T . 0.0
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6 THYROID chr1 246704363 0 72 3 0 75 0 C G 0.04
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7 THYROID chr1 246704437 5 130 0 0 135 0 C A 0.03704
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8 THYROID chr1 246707878 0 0 131 0 131 1 G . 0.0
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9 THYROID chr1 246714587 30 0 43 0 73 2 G A 0.41096
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10 THYROID chr1 246729215 1 0 1 88 90 0 T G 0.01111
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11 THYROID chr1 246729216 1 0 1 90 92 0 T G 0.01087
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12 THYROID chr1 246729378 16 7 0 0 23 0 A C 0.30435
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13 THYROID chr1 246729392 29 0 10 0 39 0 A G 0.25641
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14 THYROID chr7 91502881 0 0 0 26 26 1 T . 0.0
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15 THYROID chr7 91502897 7 36 0 0 43 0 C A 0.16279