Mercurial > repos > nick > allele_counts

comparison tests/artificial-samples.csv.out @ 5:31361191d2d2

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Uploaded tarball. Version 1.1: Stranded output, slightly different handling of minor allele ties and 0 coverage sites, revised help text, added test datasets.
author nick
date Thu, 12 Sep 2013 11:34:23 -0400
parents
children 411adeff1eec
comparison
equal deleted inserted replaced
4:898eb3daab43 5:31361191d2d2
1 BRAIN chr1 0 30 0 0 0 30 1 A . 0.0
2 ARTERY chr1 0 0 0 30 0 30 1 G . 0.0
3 THYROID chr1 0 0 30 0 0 30 1 C . 0.0
4 BRAIN chr1 10 30 0 0 0 30 1 A . 0.0
5 ARTERY chr1 10 30 0 2 0 32 1 A G 0.0625
6 THYROID chr1 10 31 0 1 0 32 1 A G 0.03125
7 BRAIN chr1 20 30 0 2 0 32 1 A G 0.0625
8 ARTERY chr1 20 34 0 6 0 40 2 A G 0.15
9 THYROID chr1 20 30 0 2 0 32 0 A G 0.0625
10 BRAIN chr1 30 30 0 0 0 30 1 A . 0.0
11 BRAIN chr1 40 0 0 0 30 30 1 T . 0.0
12 ARTERY chr1 40 1 0 2 97 100 0 T G 0.02
13 THYROID chr1 40 0 69 0 31 100 0 C T 0.31