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comparison tests/artificial.csv.out @ 5:31361191d2d2

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Uploaded tarball. Version 1.1: Stranded output, slightly different handling of minor allele ties and 0 coverage sites, revised help text, added test datasets.
author nick
date Thu, 12 Sep 2013 11:34:23 -0400
parents
children 411adeff1eec
comparison
equal deleted inserted replaced
4:898eb3daab43 5:31361191d2d2
1 THYROID chr1 0 30 0 0 0 30 1 A . 0.0
2 THYROID chr1 10 30 0 2 0 32 1 A G 0.0625
3 THYROID chr1 20 31 0 1 0 32 1 A G 0.03125
4 THYROID chr1 30 21 0 4 0 25 2 A G 0.16
5 THYROID chr1 40 22 0 3 0 25 0 A G 0.12
6 THYROID chr1 50 30 0 0 0 30 1 A . 0.0
7 THYROID chr1 60 31 0 0 0 31 1 A . 0.0
8 THYROID chr1 70 21 0 0 0 21 1 A . 0.0
9 THYROID chr1 80 22 0 0 0 22 1 A . 0.0
10 THYROID chr1 82 30 0 2 0 32 1 A G 0.0625
11 THYROID chr1 84 31 0 1 0 32 1 A G 0.03125
12 THYROID chr1 86 21 0 4 0 25 2 A G 0.16
13 THYROID chr1 88 22 0 3 0 25 0 A G 0.12
14 THYROID chr1 90 30 0 0 0 30 1 A . 0.0
15 THYROID chr1 100 31 0 0 0 31 1 A . 0.0
16 THYROID chr1 110 21 0 0 0 21 1 A . 0.0
17 THYROID chr1 120 22 0 0 0 22 1 A . 0.0
18 THYROID chr1 210 20 0 0 0 20 1 A . 0.0
19 THYROID chr1 220 22 0 0 0 22 1 A . 0.0
20 THYROID chr1 230 182 0 18 0 200 1 A G 0.09
21 THYROID chr1 240 180 0 20 0 200 2 A G 0.1
22 THYROID chr1 250 178 0 22 0 200 2 A G 0.11
23 THYROID chr1 260 106 0 14 0 120 0 A G 0.11667
24 THYROID chr1 300 2 0 2 76 80 1 T G 0.025
25 THYROID chr1 310 12 0 12 76 100 3 T G 0.12
26 THYROID chr1 320 12 0 12 56 80 3 T A 0.15
27 THYROID chr1 330 7 0 7 66 80 0 T G 0.0875
28 THYROID chr1 340 1 0 1 98 100 1 T G 0.01
29 THYROID chr1 350 11 0 11 78 100 0 T A 0.11
30 THYROID chr1 400 32 0 8 0 40 2 A G 0.2
31 THYROID chr1 410 1 0 2 97 100 0 T G 0.02
32 THYROID chr1 420 104 0 0 0 104 1 A . 0.0
33 THYROID chr1 430 30 0 0 0 30 1 A . 0.0
34 THYROID chr1 440 30 0 0 0 30 1 A . 0.0
35 THYROID 27 1234567890 29 0 0 0 29 1 A . 0.0