Mercurial > repos > nick > allele_counts

comparison tests/real.csv.out @ 5:31361191d2d2

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Uploaded tarball. Version 1.1: Stranded output, slightly different handling of minor allele ties and 0 coverage sites, revised help text, added test datasets.
author nick
date Thu, 12 Sep 2013 11:34:23 -0400
parents
children 411adeff1eec
comparison
equal deleted inserted replaced
4:898eb3daab43 5:31361191d2d2
1 THYROID chr1 246704250 29 0 0 0 29 1 A . 0.0
2 THYROID chr1 246704257 0 0 0 71 71 1 T . 0.0
3 THYROID chr1 246704268 104 0 0 0 104 1 A . 0.0
4 THYROID chr1 246704269 0 0 0 105 105 1 T . 0.0
5 THYROID chr1 246704363 0 72 3 0 75 0 C G 0.04
6 THYROID chr1 246704437 5 130 0 0 135 0 C A 0.03704
7 THYROID chr1 246707878 0 0 131 0 131 1 G . 0.0
8 THYROID chr1 246714587 30 0 43 0 73 2 G A 0.41096
9 THYROID chr1 246729216 1 0 1 90 92 0 T G 0.01087
10 THYROID chr7 91502881 0 0 0 26 26 1 T . 0.0
11 THYROID chr7 91502897 7 36 0 0 43 0 C A 0.16279