Mercurial > repos > nick > allele_counts

comparison allele-counts.xml @ 10:7f19e8c03358 draft

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"planemo upload for repository https://github.com/galaxyproject/dunovo commit 19875a8a45eb5e40a47fe177deafe690fb4f04fb"
author nick
date Tue, 31 Mar 2020 20:24:27 -0400
parents 6cc488e11544
children cf2af5c3118c
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9:6cc488e11544 10:7f19e8c03358
2 <description> process variant counts</description> 2 <description> process variant counts</description>
3 <stdio> 3 <stdio>
4 <exit_code range="1:" level="fatal" /> 4 <exit_code range="1:" level="fatal" />
5 <exit_code range=":-1" level="fatal" /> 5 <exit_code range=":-1" level="fatal" />
6 </stdio> 6 </stdio>
7 <command>allele-counts.py -i $input -o $output -f $freq -c $covg $header $stranded $nofilt 7 <command>allele-counts.py -i '$input' -o '$output' -f $freq -c $covg $header $stranded $nofilt
8 #if $seed: 8 #if $seed:
9 -r $seed 9 -r '$seed'
10 #end if 10 #end if
11 </command> 11 </command>
12 <inputs> 12 <inputs>
13 <param name="input" type="data" format="vcf" label="Input variants from Naive Variants Detector"/> 13 <param name="input" type="data" format="vcf" label="Input variants from Naive Variants Detector"/>
14 <param name="freq" type="float" value="1.0" min="0" max="100" label="Minor allele frequency threshold" help="in percent"/> 14 <param name="freq" type="float" value="1.0" min="0" max="100" label="Minor allele frequency threshold" help="in percent"/>