Mercurial > repos > nick > allele_counts
diff tests/real-nofilt.csv.out @ 5:31361191d2d2
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Version 1.1: Stranded output, slightly different handling of minor allele ties and 0 coverage sites, revised help text, added test datasets.
| author | nick |
|---|---|
| date | Thu, 12 Sep 2013 11:34:23 -0400 |
| parents | |
| children | 411adeff1eec |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tests/real-nofilt.csv.out Thu Sep 12 11:34:23 2013 -0400 @@ -0,0 +1,15 @@ +#SAMPLE CHR POS A C G T CVRG ALLELES MAJOR MINOR MINOR.FREQ.PERC. +THYROID chr1 246704250 29 0 0 0 29 1 A . 0.0 +THYROID chr1 246704257 0 0 0 71 71 1 T . 0.0 +THYROID chr1 246704268 104 0 0 0 104 1 A . 0.0 +THYROID chr1 246704269 0 0 0 105 105 1 T . 0.0 +THYROID chr1 246704363 0 72 3 0 75 0 C G 0.04 +THYROID chr1 246704437 5 130 0 0 135 0 C A 0.03704 +THYROID chr1 246707878 0 0 131 0 131 1 G . 0.0 +THYROID chr1 246714587 30 0 43 0 73 2 G A 0.41096 +THYROID chr1 246729215 1 0 1 88 90 0 T G 0.01111 +THYROID chr1 246729216 1 0 1 90 92 0 T G 0.01087 +THYROID chr1 246729378 16 7 0 0 23 0 A C 0.30435 +THYROID chr1 246729392 29 0 10 0 39 0 A G 0.25641 +THYROID chr7 91502881 0 0 0 26 26 1 T . 0.0 +THYROID chr7 91502897 7 36 0 0 43 0 C A 0.16279