Mercurial > repos > nick > allele_counts
diff tests/artificial.csv.out @ 8:411adeff1eec draft
Handle "." sample columns, update tests to work with BIAS column.
| author | nick |
|---|---|
| date | Tue, 23 Aug 2016 02:30:56 -0400 |
| parents | 31361191d2d2 |
| children | 6cc488e11544 |
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--- a/tests/artificial.csv.out Wed Dec 09 11:37:02 2015 -0500 +++ b/tests/artificial.csv.out Tue Aug 23 02:30:56 2016 -0400 @@ -1,35 +1,35 @@ -THYROID chr1 0 30 0 0 0 30 1 A . 0.0 -THYROID chr1 10 30 0 2 0 32 1 A G 0.0625 -THYROID chr1 20 31 0 1 0 32 1 A G 0.03125 -THYROID chr1 30 21 0 4 0 25 2 A G 0.16 -THYROID chr1 40 22 0 3 0 25 0 A G 0.12 -THYROID chr1 50 30 0 0 0 30 1 A . 0.0 -THYROID chr1 60 31 0 0 0 31 1 A . 0.0 -THYROID chr1 70 21 0 0 0 21 1 A . 0.0 -THYROID chr1 80 22 0 0 0 22 1 A . 0.0 -THYROID chr1 82 30 0 2 0 32 1 A G 0.0625 -THYROID chr1 84 31 0 1 0 32 1 A G 0.03125 -THYROID chr1 86 21 0 4 0 25 2 A G 0.16 -THYROID chr1 88 22 0 3 0 25 0 A G 0.12 -THYROID chr1 90 30 0 0 0 30 1 A . 0.0 -THYROID chr1 100 31 0 0 0 31 1 A . 0.0 -THYROID chr1 110 21 0 0 0 21 1 A . 0.0 -THYROID chr1 120 22 0 0 0 22 1 A . 0.0 -THYROID chr1 210 20 0 0 0 20 1 A . 0.0 -THYROID chr1 220 22 0 0 0 22 1 A . 0.0 -THYROID chr1 230 182 0 18 0 200 1 A G 0.09 -THYROID chr1 240 180 0 20 0 200 2 A G 0.1 -THYROID chr1 250 178 0 22 0 200 2 A G 0.11 -THYROID chr1 260 106 0 14 0 120 0 A G 0.11667 -THYROID chr1 300 2 0 2 76 80 1 T G 0.025 -THYROID chr1 310 12 0 12 76 100 3 T G 0.12 -THYROID chr1 320 12 0 12 56 80 3 T A 0.15 -THYROID chr1 330 7 0 7 66 80 0 T G 0.0875 -THYROID chr1 340 1 0 1 98 100 1 T G 0.01 -THYROID chr1 350 11 0 11 78 100 0 T A 0.11 -THYROID chr1 400 32 0 8 0 40 2 A G 0.2 -THYROID chr1 410 1 0 2 97 100 0 T G 0.02 -THYROID chr1 420 104 0 0 0 104 1 A . 0.0 -THYROID chr1 430 30 0 0 0 30 1 A . 0.0 -THYROID chr1 440 30 0 0 0 30 1 A . 0.0 -THYROID 27 1234567890 29 0 0 0 29 1 A . 0.0 +THYROID chr1 0 30 0 0 0 30 1 A . 0.0 . +THYROID chr1 10 30 0 2 0 32 1 A G 0.0625 0.0 +THYROID chr1 20 31 0 1 0 32 1 A G 0.03125 2.0 +THYROID chr1 30 21 0 4 0 25 2 A G 0.16 0.08013 +THYROID chr1 40 22 0 3 0 25 0 A G 0.12 1.78571 +THYROID chr1 50 30 0 0 0 30 1 A . 0.0 . +THYROID chr1 60 31 0 0 0 31 1 A . 0.0 . +THYROID chr1 70 21 0 0 0 21 1 A . 0.0 . +THYROID chr1 80 22 0 0 0 22 1 A . 0.0 . +THYROID chr1 82 30 0 2 0 32 1 A G 0.0625 0.0 +THYROID chr1 84 31 0 1 0 32 1 A G 0.03125 2.0 +THYROID chr1 86 21 0 4 0 25 2 A G 0.16 0.08013 +THYROID chr1 88 22 0 3 0 25 0 A G 0.12 1.78571 +THYROID chr1 90 30 0 0 0 30 1 A . 0.0 . +THYROID chr1 100 31 0 0 0 31 1 A . 0.0 . +THYROID chr1 110 21 0 0 0 21 1 A . 0.0 . +THYROID chr1 120 22 0 0 0 22 1 A . 0.0 . +THYROID chr1 210 20 0 0 0 20 1 A . 0.0 . +THYROID chr1 220 22 0 0 0 22 1 A . 0.0 . +THYROID chr1 230 182 0 18 0 200 1 A G 0.09 0.0 +THYROID chr1 240 180 0 20 0 200 2 A G 0.1 0.0 +THYROID chr1 250 178 0 22 0 200 2 A G 0.11 0.0 +THYROID chr1 260 106 0 14 0 120 0 A G 0.11667 2.4 +THYROID chr1 300 2 0 2 76 80 1 T G 0.025 0.0 +THYROID chr1 310 12 0 12 76 100 3 T G 0.12 0.0 +THYROID chr1 320 12 0 12 56 80 3 T A 0.15 0.64394 +THYROID chr1 330 7 0 7 66 80 0 T G 0.0875 1.06247 +THYROID chr1 340 1 0 1 98 100 1 T G 0.01 5.21053 +THYROID chr1 350 11 0 11 78 100 0 T A 0.11 1.25352 +THYROID chr1 400 32 0 8 0 40 2 A G 0.2 0.0 +THYROID chr1 410 1 0 2 97 100 0 T G 0.02 5.5 +THYROID chr1 420 104 0 0 0 104 1 A . 0.0 . +THYROID chr1 430 30 0 0 0 30 1 A . 0.0 . +THYROID chr1 440 30 0 0 0 30 1 A . 0.0 . +THYROID 27 1234567890 29 0 0 0 29 1 A . 0.0 .