# HG changeset patch
# User Nick Stoler <nstoler@psu.edu>
# Date 1393816649 18000
# Node ID 0c552e103c931110b77fa2f2f436ef09b04972bf
# Parent  58160195728e323d6126c0c40341a20ce09960a7
literal.xml: Small UI, documentation changes

diff -r 58160195728e -r 0c552e103c93 literal.xml
--- a/literal.xml	Sun Mar 02 22:01:44 2014 -0500
+++ b/literal.xml	Sun Mar 02 22:17:29 2014 -0500
@@ -19,6 +19,9 @@
       </when>
       <when value="true">
         <!-- 'G':'255,255,255', 'C':'0,0,255', 'A':'0,255,0', 'T':'255,0,0' -->
+        <param name="background" type="text" value="255,255,255" label="Background RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)">
+          <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator>
+        </param>
         <param name="G" type="text" value="255,255,255" label="G RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)">
           <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator>
         </param>
@@ -31,9 +34,6 @@
         <param name="T" type="text" value="255,0,0" label="T RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)">
           <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator>
         </param>
-        <param name="background" type="text" value="255,255,255" label="background RGB value" help="Three numbers 0 through 255, separated by commas (no spaces)">
-          <validator type="regex" message='Color must be in the form of "R,G,B"'>^[0-9]+,[0-9]+,[0-9]+$</validator>
-        </param>
       </when>
     </conditional>
   </inputs>
@@ -55,7 +55,7 @@
 
 **Input Format**
 
-The input sequence can be in FASTA format or a plain text file containing only the sequence. Any non-ATGC characters (case-insensitive) will be skipped.
+The input sequence can be in FASTA format or a plain text file containing only the sequence. Any non-ATGC characters (case-insensitive) will be skipped. In a FASTA file with multiple sequences, all sequences will be used.
 
   </help>