dunovo: err.log annotate

annotate err.log @ 11:0f8e0dc73d1d draft default tip

"planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty"

author	nick
date	Wed, 16 Feb 2022 22:59:00 +0000
parents
children

rev	line source
11 0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	1 planemo couldn't find a target test-data directory, you should likely create a test-data directory or pass an explicit path using --test_data.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	2 galaxy.util.commands WARNING: Passing program arguments as a string may be a security hazard if combined with untrusted input
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	3 Cloning into '/tmp/tmppmuqm8bo/galaxy-dev'...
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	4 done.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	5 galaxy.util.commands WARNING: Passing program arguments as a string may be a security hazard if combined with untrusted input
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	6 warning Resolution field "chokidar@3.4.0" is incompatible with requested version "chokidar@^2.0.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	7 warning Resolution field "chokidar@3.4.0" is incompatible with requested version "chokidar@^3.4.2"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	8 warning Resolution field "ua-parser-js@0.7.30" is incompatible with requested version "ua-parser-js@0.7.22"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	9 warning Resolution field "chokidar@3.4.0" is incompatible with requested version "chokidar@^2.1.8"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	10 warning Resolution field "chokidar@3.4.0" is incompatible with requested version "chokidar@^2.0.4"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	11 warning Resolution field "chokidar@3.4.0" is incompatible with requested version "chokidar@^2.1.8"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	12 warning "@galaxyproject/bootstrap-tour > bootstrap@5.0.2" has unmet peer dependency "@popperjs/core@^2.9.2".
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	13 warning " > @handsontable/vue@2.0.0" has incorrect peer dependency "handsontable@^4.0.0".
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	14 warning " > @hirez_io/observer-spy@2.0.0" has unmet peer dependency "typescript@>=2.8.1".
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	15 warning " > linkifyjs@2.1.9" has unmet peer dependency "react@>= 0.14.0".
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	16 warning " > linkifyjs@2.1.9" has unmet peer dependency "react-dom@>= 0.14.0".
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	17 warning babel-preset-env > babel-plugin-check-es2015-constants > babel-runtime > core-js@2.6.12: core-js@<3.4 is no longer maintained and not recommended for usage due to the number of issues. Because of the V8 engine whims, feature detection in old core-js versions could cause a slowdown up to 100x even if nothing is polyfilled. Please, upgrade your dependencies to the actual version of core-js.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	18 warning parcel-bundler@1.12.5: Parcel v1 is no longer maintained. Please migrate to v2, which is published under the 'parcel' package. See https://v2.parceljs.org/getting-started/migration for details.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	19 warning parcel-bundler > core-js@2.6.12: core-js@<3.4 is no longer maintained and not recommended for usage due to the number of issues. Because of the V8 engine whims, feature detection in old core-js versions could cause a slowdown up to 100x even if nothing is polyfilled. Please, upgrade your dependencies to the actual version of core-js.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	20 warning parcel-bundler > @parcel/watcher > chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	21 warning parcel-bundler > htmlnano > svgo@1.3.2: This SVGO version is no longer supported. Upgrade to v2.x.x.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	22 warning parcel-bundler > @parcel/watcher > chokidar > fsevents@1.2.13: fsevents 1 will break on node v14+ and could be using insecure binaries. Upgrade to fsevents 2.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	23 warning parcel-bundler > cssnano > cssnano-preset-default > postcss-svgo > svgo@1.3.2: This SVGO version is no longer supported. Upgrade to v2.x.x.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	24 warning parcel-bundler > htmlnano > uncss > request@2.88.2: request has been deprecated, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	25 warning parcel-bundler > htmlnano > uncss > jsdom > request@2.88.2: request has been deprecated, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	26 warning parcel-bundler > micromatch > snapdragon > source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	27 warning parcel-bundler > node-libs-browser > url > querystring@0.2.0: The querystring API is considered Legacy. new code should use the URLSearchParams API instead.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	28 warning parcel-bundler > htmlnano > uncss > jsdom > request-promise-native@1.0.9: request-promise-native has been deprecated because it extends the now deprecated request package, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	29 warning parcel-bundler > htmlnano > uncss > request > har-validator@5.1.5: this library is no longer supported
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	30 warning parcel-bundler > htmlnano > uncss > request > uuid@3.4.0: Please upgrade to version 7 or higher. Older versions may use Math.random() in certain circumstances, which is known to be problematic. See https://v8.dev/blog/math-random for details.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	31 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	32 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	33 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > urix@0.1.0: Please see https://github.com/lydell/urix#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	34 warning Workspaces can only be enabled in private projects.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	35 warning plotly.js > color-rgba > color-space > mumath@3.3.4: Redundant dependency in your project.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	36 warning copy-webpack-plugin > webpack-log > uuid@3.4.0: Please upgrade to version 7 or higher. Older versions may use Math.random() in certain circumstances, which is known to be problematic. See https://v8.dev/blog/math-random for details.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	37 warning webpack > watchpack > watchpack-chokidar2 > chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	38 warning webpack > micromatch > snapdragon > source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	39 warning webpack > node-libs-browser > url > querystring@0.2.0: The querystring API is considered Legacy. new code should use the URLSearchParams API instead.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	40 warning webpack > watchpack > watchpack-chokidar2 > chokidar > fsevents@1.2.13: fsevents 1 will break on node v14+ and could be using insecure binaries. Upgrade to fsevents 2.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	41 warning webpack > micromatch > snapdragon > source-map-resolve > urix@0.1.0: Please see https://github.com/lydell/urix#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	42 warning webpack > micromatch > snapdragon > source-map-resolve > source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	43 warning webpack > micromatch > snapdragon > source-map-resolve > resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	44 warning webpack > watchpack > watchpack-chokidar2 > chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	45 warning webpack > micromatch > snapdragon > source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	46 warning webpack > node-libs-browser > url > querystring@0.2.0: The querystring API is considered Legacy. new code should use the URLSearchParams API instead.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	47 warning webpack > watchpack > watchpack-chokidar2 > chokidar > fsevents@1.2.13: fsevents 1 will break on node v14+ and could be using insecure binaries. Upgrade to fsevents 2.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	48 warning webpack > micromatch > snapdragon > source-map-resolve > resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	49 warning webpack > micromatch > snapdragon > source-map-resolve > urix@0.1.0: Please see https://github.com/lydell/urix#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	50 warning webpack > micromatch > snapdragon > source-map-resolve > source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	51 warning extract-text-webpack-plugin@3.0.2: Deprecated. Please use https://github.com/webpack-contrib/mini-css-extract-plugin
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	52 warning " > extract-text-webpack-plugin@3.0.2" has incorrect peer dependency "webpack@^3.1.0".
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	53 warning babel-preset-env > babel-plugin-check-es2015-constants > babel-runtime > core-js@2.6.12: core-js@<3.4 is no longer maintained and not recommended for usage due to the number of issues. Because of the V8 engine whims, feature detection in old core-js versions could cause a slowdown up to 100x even if nothing is polyfilled. Please, upgrade your dependencies to the actual version of core-js.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	54 warning parcel-bundler@1.12.5: Parcel v1 is no longer maintained. Please migrate to v2, which is published under the 'parcel' package. See https://v2.parceljs.org/getting-started/migration for details.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	55 warning parcel-bundler > core-js@2.6.12: core-js@<3.4 is no longer maintained and not recommended for usage due to the number of issues. Because of the V8 engine whims, feature detection in old core-js versions could cause a slowdown up to 100x even if nothing is polyfilled. Please, upgrade your dependencies to the actual version of core-js.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	56 warning parcel-bundler > @parcel/watcher > chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	57 warning parcel-bundler > htmlnano > svgo@1.3.2: This SVGO version is no longer supported. Upgrade to v2.x.x.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	58 warning parcel-bundler > @parcel/watcher > chokidar > fsevents@1.2.13: fsevents 1 will break on node v14+ and could be using insecure binaries. Upgrade to fsevents 2.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	59 warning parcel-bundler > cssnano > cssnano-preset-default > postcss-svgo > svgo@1.3.2: This SVGO version is no longer supported. Upgrade to v2.x.x.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	60 warning parcel-bundler > htmlnano > uncss > request@2.88.2: request has been deprecated, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	61 warning parcel-bundler > htmlnano > uncss > jsdom > request@2.88.2: request has been deprecated, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	62 warning parcel-bundler > micromatch > snapdragon > source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	63 warning parcel-bundler > node-libs-browser > url > querystring@0.2.0: The querystring API is considered Legacy. new code should use the URLSearchParams API instead.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	64 warning parcel-bundler > htmlnano > uncss > request > har-validator@5.1.5: this library is no longer supported
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	65 warning parcel-bundler > htmlnano > uncss > request > uuid@3.4.0: Please upgrade to version 7 or higher. Older versions may use Math.random() in certain circumstances, which is known to be problematic. See https://v8.dev/blog/math-random for details.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	66 warning parcel-bundler > htmlnano > uncss > jsdom > request-promise-native@1.0.9: request-promise-native has been deprecated because it extends the now deprecated request package, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	67 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	68 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	69 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > urix@0.1.0: Please see https://github.com/lydell/urix#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	70 warning fbjs > core-js@2.6.12: core-js@<3.4 is no longer maintained and not recommended for usage due to the number of issues. Because of the V8 engine whims, feature detection in old core-js versions could cause a slowdown up to 100x even if nothing is polyfilled. Please, upgrade your dependencies to the actual version of core-js.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	71 warning hyphy-vision > extract-text-webpack-plugin@2.1.2: Deprecated. Please use https://github.com/webpack-contrib/mini-css-extract-plugin
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	72 warning hyphy-vision > popper.js@1.16.1: You can find the new Popper v2 at @popperjs/core, this package is dedicated to the legacy v1
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	73 warning hyphy-vision > alignment.js > popper.js@1.16.1: You can find the new Popper v2 at @popperjs/core, this package is dedicated to the legacy v1
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	74 warning hyphy-vision > alignment.js > phylotree > rollup-plugin-node-resolve@3.4.0: This package has been deprecated and is no longer maintained. Please use @rollup/plugin-node-resolve.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	75 warning webpack > watchpack > watchpack-chokidar2 > chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	76 warning webpack > micromatch > snapdragon > source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	77 warning webpack > node-libs-browser > url > querystring@0.2.0: The querystring API is considered Legacy. new code should use the URLSearchParams API instead.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	78 warning webpack > watchpack > watchpack-chokidar2 > chokidar > fsevents@1.2.13: fsevents 1 will break on node v14+ and could be using insecure binaries. Upgrade to fsevents 2.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	79 warning webpack > micromatch > snapdragon > source-map-resolve > resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	80 warning webpack > micromatch > snapdragon > source-map-resolve > source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	81 warning webpack > micromatch > snapdragon > source-map-resolve > urix@0.1.0: Please see https://github.com/lydell/urix#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	82 warning "hyphy-vision > extract-text-webpack-plugin@2.1.2" has incorrect peer dependency "webpack@^2.2.0".
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	83 warning extract-text-webpack-plugin@3.0.2: Deprecated. Please use https://github.com/webpack-contrib/mini-css-extract-plugin
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	84 warning webpack > watchpack > watchpack-chokidar2 > chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	85 warning webpack > micromatch > snapdragon > source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	86 warning webpack > node-libs-browser > url > querystring@0.2.0: The querystring API is considered Legacy. new code should use the URLSearchParams API instead.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	87 warning webpack > watchpack > watchpack-chokidar2 > chokidar > fsevents@1.2.13: fsevents 1 will break on node v14+ and could be using insecure binaries. Upgrade to fsevents 2.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	88 warning webpack > micromatch > snapdragon > source-map-resolve > resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	89 warning webpack > micromatch > snapdragon > source-map-resolve > urix@0.1.0: Please see https://github.com/lydell/urix#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	90 warning webpack > micromatch > snapdragon > source-map-resolve > source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	91 warning " > extract-text-webpack-plugin@3.0.2" has incorrect peer dependency "webpack@^3.1.0".
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	92 warning babel-preset-env > babel-plugin-check-es2015-constants > babel-runtime > core-js@2.6.12: core-js@<3.4 is no longer maintained and not recommended for usage due to the number of issues. Because of the V8 engine whims, feature detection in old core-js versions could cause a slowdown up to 100x even if nothing is polyfilled. Please, upgrade your dependencies to the actual version of core-js.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	93 warning parcel-bundler@1.12.5: Parcel v1 is no longer maintained. Please migrate to v2, which is published under the 'parcel' package. See https://v2.parceljs.org/getting-started/migration for details.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	94 warning parcel-bundler > core-js@2.6.12: core-js@<3.4 is no longer maintained and not recommended for usage due to the number of issues. Because of the V8 engine whims, feature detection in old core-js versions could cause a slowdown up to 100x even if nothing is polyfilled. Please, upgrade your dependencies to the actual version of core-js.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	95 warning parcel-bundler > @parcel/watcher > chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	96 warning parcel-bundler > htmlnano > svgo@1.3.2: This SVGO version is no longer supported. Upgrade to v2.x.x.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	97 warning parcel-bundler > @parcel/watcher > chokidar > fsevents@1.2.13: fsevents 1 will break on node v14+ and could be using insecure binaries. Upgrade to fsevents 2.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	98 warning parcel-bundler > cssnano > cssnano-preset-default > postcss-svgo > svgo@1.3.2: This SVGO version is no longer supported. Upgrade to v2.x.x.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	99 warning parcel-bundler > htmlnano > uncss > request@2.88.2: request has been deprecated, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	100 warning parcel-bundler > htmlnano > uncss > jsdom > request@2.88.2: request has been deprecated, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	101 warning parcel-bundler > micromatch > snapdragon > source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	102 warning parcel-bundler > node-libs-browser > url > querystring@0.2.0: The querystring API is considered Legacy. new code should use the URLSearchParams API instead.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	103 warning parcel-bundler > htmlnano > uncss > jsdom > request-promise-native@1.0.9: request-promise-native has been deprecated because it extends the now deprecated request package, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	104 warning parcel-bundler > htmlnano > uncss > request > har-validator@5.1.5: this library is no longer supported
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	105 warning parcel-bundler > htmlnano > uncss > request > uuid@3.4.0: Please upgrade to version 7 or higher. Older versions may use Math.random() in certain circumstances, which is known to be problematic. See https://v8.dev/blog/math-random for details.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	106 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	107 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > urix@0.1.0: Please see https://github.com/lydell/urix#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	108 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	109 warning cpy-cli > cpy > globby > fast-glob > micromatch > snapdragon > source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	110 warning cpy-cli > cpy > globby > fast-glob > micromatch > snapdragon > source-map-resolve > source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	111 warning cpy-cli > cpy > globby > fast-glob > micromatch > snapdragon > source-map-resolve > resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	112 warning cpy-cli > cpy > globby > fast-glob > micromatch > snapdragon > source-map-resolve > urix@0.1.0: Please see https://github.com/lydell/urix#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	113 warning axios@0.19.2: Critical security vulnerability fixed in v0.21.1. For more information, see https://github.com/axios/axios/pull/3410
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	114 warning babel-preset-env > babel-plugin-check-es2015-constants > babel-runtime > core-js@2.6.12: core-js@<3.4 is no longer maintained and not recommended for usage due to the number of issues. Because of the V8 engine whims, feature detection in old core-js versions could cause a slowdown up to 100x even if nothing is polyfilled. Please, upgrade your dependencies to the actual version of core-js.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	115 warning parcel-bundler@1.12.5: Parcel v1 is no longer maintained. Please migrate to v2, which is published under the 'parcel' package. See https://v2.parceljs.org/getting-started/migration for details.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	116 warning parcel-bundler > core-js@2.6.12: core-js@<3.4 is no longer maintained and not recommended for usage due to the number of issues. Because of the V8 engine whims, feature detection in old core-js versions could cause a slowdown up to 100x even if nothing is polyfilled. Please, upgrade your dependencies to the actual version of core-js.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	117 warning parcel-bundler > @parcel/watcher > chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	118 warning parcel-bundler > htmlnano > svgo@1.3.2: This SVGO version is no longer supported. Upgrade to v2.x.x.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	119 warning parcel-bundler > @parcel/watcher > chokidar > fsevents@1.2.13: fsevents 1 will break on node v14+ and could be using insecure binaries. Upgrade to fsevents 2.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	120 warning parcel-bundler > cssnano > cssnano-preset-default > postcss-svgo > svgo@1.3.2: This SVGO version is no longer supported. Upgrade to v2.x.x.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	121 warning parcel-bundler > htmlnano > uncss > request@2.88.2: request has been deprecated, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	122 warning parcel-bundler > htmlnano > uncss > jsdom > request@2.88.2: request has been deprecated, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	123 warning parcel-bundler > node-libs-browser > url > querystring@0.2.0: The querystring API is considered Legacy. new code should use the URLSearchParams API instead.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	124 warning parcel-bundler > micromatch > snapdragon > source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	125 warning parcel-bundler > htmlnano > uncss > request > har-validator@5.1.5: this library is no longer supported
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	126 warning parcel-bundler > htmlnano > uncss > request > uuid@3.4.0: Please upgrade to version 7 or higher. Older versions may use Math.random() in certain circumstances, which is known to be problematic. See https://v8.dev/blog/math-random for details.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	127 warning parcel-bundler > htmlnano > uncss > jsdom > request-promise-native@1.0.9: request-promise-native has been deprecated because it extends the now deprecated request package, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	128 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	129 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	130 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > urix@0.1.0: Please see https://github.com/lydell/urix#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	131 warning package.json: License should be a valid SPDX license expression
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	132 warning openseadragon@2.4.2: License should be a valid SPDX license expression
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	133 warning cpy-cli > cpy > globby > fast-glob > micromatch > snapdragon > source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	134 warning cpy-cli > cpy > globby > fast-glob > micromatch > snapdragon > source-map-resolve > source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	135 warning cpy-cli > cpy > globby > fast-glob > micromatch > snapdragon > source-map-resolve > resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	136 warning cpy-cli > cpy > globby > fast-glob > micromatch > snapdragon > source-map-resolve > urix@0.1.0: Please see https://github.com/lydell/urix#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	137 warning package.json: License should be a valid SPDX license expression
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	138 warning bio-pv > sniper > ecstatic@0.5.8: This package is unmaintained and deprecated. See the GH Issue 259.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	139 warning bio-pv > sniper > swig@1.4.2: This package is no longer maintained
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	140 warning bio-pv > sniper > biojs-util-snippets > request@2.88.2: request has been deprecated, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	141 warning bio-pv > browserify > glob > minimatch@2.0.10: Please update to minimatch 3.0.2 or higher to avoid a RegExp DoS issue
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	142 warning bio-pv > browserify > url > querystring@0.2.0: The querystring API is considered Legacy. new code should use the URLSearchParams API instead.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	143 warning bio-pv > sniper > biojs-util-snippets > request > har-validator@5.1.5: this library is no longer supported
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	144 warning bio-pv > sniper > biojs-util-snippets > request > uuid@3.4.0: Please upgrade to version 7 or higher. Older versions may use Math.random() in certain circumstances, which is known to be problematic. See https://v8.dev/blog/math-random for details.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	145 warning parcel-bundler@1.12.5: Parcel v1 is no longer maintained. Please migrate to v2, which is published under the 'parcel' package. See https://v2.parceljs.org/getting-started/migration for details.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	146 warning parcel-bundler > core-js@2.6.12: core-js@<3.4 is no longer maintained and not recommended for usage due to the number of issues. Because of the V8 engine whims, feature detection in old core-js versions could cause a slowdown up to 100x even if nothing is polyfilled. Please, upgrade your dependencies to the actual version of core-js.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	147 warning parcel-bundler > node-libs-browser > url > querystring@0.2.0: The querystring API is considered Legacy. new code should use the URLSearchParams API instead.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	148 warning parcel-bundler > @parcel/watcher > chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	149 warning parcel-bundler > babylon-walk > babel-runtime > core-js@2.6.12: core-js@<3.4 is no longer maintained and not recommended for usage due to the number of issues. Because of the V8 engine whims, feature detection in old core-js versions could cause a slowdown up to 100x even if nothing is polyfilled. Please, upgrade your dependencies to the actual version of core-js.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	150 warning parcel-bundler > htmlnano > uncss > request@2.88.2: request has been deprecated, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	151 warning parcel-bundler > htmlnano > svgo@1.3.2: This SVGO version is no longer supported. Upgrade to v2.x.x.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	152 warning parcel-bundler > @parcel/watcher > chokidar > fsevents@1.2.13: fsevents 1 will break on node v14+ and could be using insecure binaries. Upgrade to fsevents 2.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	153 warning parcel-bundler > cssnano > cssnano-preset-default > postcss-svgo > svgo@1.3.2: This SVGO version is no longer supported. Upgrade to v2.x.x.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	154 warning parcel-bundler > htmlnano > uncss > jsdom > request@2.88.2: request has been deprecated, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	155 warning parcel-bundler > micromatch > snapdragon > source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	156 warning parcel-bundler > htmlnano > uncss > jsdom > request-promise-native@1.0.9: request-promise-native has been deprecated because it extends the now deprecated request package, see https://github.com/request/request/issues/3142
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	157 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	158 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	159 warning parcel-bundler > micromatch > snapdragon > source-map-resolve > urix@0.1.0: Please see https://github.com/lydell/urix#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	160 warning fbjs > core-js@2.6.12: core-js@<3.4 is no longer maintained and not recommended for usage due to the number of issues. Because of the V8 engine whims, feature detection in old core-js versions could cause a slowdown up to 100x even if nothing is polyfilled. Please, upgrade your dependencies to the actual version of core-js.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	161 warning webpack > watchpack > watchpack-chokidar2 > chokidar@2.1.8: Chokidar 2 does not receive security updates since 2019. Upgrade to chokidar 3 with 15x fewer dependencies
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	162 warning webpack > micromatch > snapdragon > source-map-resolve@0.5.3: See https://github.com/lydell/source-map-resolve#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	163 warning webpack > node-libs-browser > url > querystring@0.2.0: The querystring API is considered Legacy. new code should use the URLSearchParams API instead.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	164 warning webpack > watchpack > watchpack-chokidar2 > chokidar > fsevents@1.2.13: fsevents 1 will break on node v14+ and could be using insecure binaries. Upgrade to fsevents 2.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	165 warning webpack > micromatch > snapdragon > source-map-resolve > source-map-url@0.4.1: See https://github.com/lydell/source-map-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	166 warning webpack > micromatch > snapdragon > source-map-resolve > urix@0.1.0: Please see https://github.com/lydell/urix#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	167 warning webpack > micromatch > snapdragon > source-map-resolve > resolve-url@0.2.1: https://github.com/lydell/resolve-url#deprecated
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	168 Browserslist: caniuse-lite is outdated. Please run:
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	169 npx browserslist@latest --update-db
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	170 Browserslist: caniuse-lite is outdated. Please run:
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	171 npx browserslist@latest --update-db
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	172 [BABEL] Note: The code generator has deoptimised the styling of /tmp/tmppmuqm8bo/galaxy-dev/client/node_modules/bootstrap-vue/esm/icons/icons.js as it exceeds the max of 500KB.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	173 duplicate attribute: :writable
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	174 [BABEL] Note: The code generator has deoptimised the styling of /tmp/tmppmuqm8bo/galaxy-dev/client/node_modules/handsontable/dist/handsontable.js as it exceeds the max of 500KB.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	175 Browserslist: caniuse-lite is outdated. Please run next command `yarn upgrade caniuse-lite browserslist`
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	176 galaxy.util.commands WARNING: Passing program arguments as a string may be a security hazard if combined with untrusted input
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	177 [2022-02-16 16:20:15 -0500] [2610616] [INFO] Starting gunicorn 20.1.0
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	178 [2022-02-16 16:20:15 -0500] [2610616] [INFO] Listening at: http://127.0.0.1:9090 (2610616)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	179 [2022-02-16 16:20:15 -0500] [2610616] [INFO] Using worker: sync
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	180 [2022-02-16 16:20:15 -0500] [2610618] [INFO] Booting worker with pid: 2610618
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	181 DEBUG:galaxy.app:python path is: /tmp/tmppmuqm8bo/galaxy-dev/lib, /tmp/tmppmuqm8bo/galaxy-dev, /home/me/.planemo/gx_venv_3/bin, /usr/lib/python38.zip, /usr/lib/python3.8, /usr/lib/python3.8/lib-dynload, /home/me/.planemo/gx_venv_3/lib/python3.8/site-packages
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	182 DEBUG:galaxy.config:Configuration directory is /tmp/tmppmuqm8bo
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	183 DEBUG:galaxy.config:Data directory is /tmp/tmppmuqm8bo/galaxy-dev/database
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	184 DEBUG:galaxy.config:Managed config directory is /tmp/tmppmuqm8bo
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	185 DEBUG:galaxy.containers:config file '/tmp/tmppmuqm8bo/containers_conf.yml' does not exist, running with default config
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	186 galaxy.model.migrate.check INFO 2022-02-16 16:20:19,706 [pN:MainProcess,p:2610618,tN:MainThread] Creating database for URI [sqlite:////tmp/tmppmuqm8bo/galaxy.sqlite?isolation_level=IMMEDIATE]
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	187 galaxy.model.migrate.check INFO 2022-02-16 16:20:19,707 [pN:MainProcess,p:2610618,tN:MainThread] Creating new database from scratch, skipping migrations
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	188 galaxy.config INFO 2022-02-16 16:20:21,165 [pN:MainProcess,p:2610618,tN:MainThread] Install database targetting Galaxy's database configuration.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	189 galaxy.web_stack.handlers INFO 2022-02-16 16:20:21,198 [pN:main,p:2610618,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	190 galaxy.jobs INFO 2022-02-16 16:20:21,198 [pN:main,p:2610618,tN:MainThread] Job handler assignment methods set to: db-skip-locked
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	191 galaxy.jobs INFO 2022-02-16 16:20:21,198 [pN:main,p:2610618,tN:MainThread] Tag [_default_] handlers: main
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	192 /tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py:587: SAWarning: relationship 'RepositoryRepositoryDependencyAssociation.repository' will copy column tool_shed_repository.id to column repository_repository_dependency_association.tool_shed_repository_id, which conflicts with relationship(s): 'ToolShedRepository.required_repositories' (copies tool_shed_repository.id to repository_repository_dependency_association.tool_shed_repository_id). If this is not the intention, consider if these relationships should be linked with back_populates, or if viewonly=True should be applied to one or more if they are read-only. For the less common case that foreign key constraints are partially overlapping, the orm.foreign() annotation can be used to isolate the columns that should be written towards. To silence this warning, add the parameter 'overlaps="required_repositories"' to the 'RepositoryRepositoryDependencyAssociation.repository' relationship.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	193 for tool_shed_repository in self.context.query(self.install_model.ToolShedRepository) \
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	194 galaxy.queue_worker INFO 2022-02-16 16:20:21,557 [pN:main,p:2610618,tN:MainThread] Initializing main Galaxy Queue Worker on sqlalchemy+sqlite:////tmp/tmppmuqm8bo/galaxy.sqlite?isolation_level=IMMEDIATE
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	195 galaxy.tools.data INFO 2022-02-16 16:20:21,574 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/all_fasta.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	196 galaxy.tools.data INFO 2022-02-16 16:20:21,574 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/bfast_indexes.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	197 galaxy.tools.data INFO 2022-02-16 16:20:21,575 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/blastdb.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	198 galaxy.tools.data INFO 2022-02-16 16:20:21,575 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/blastdb_p.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	199 galaxy.tools.data INFO 2022-02-16 16:20:21,575 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/blastdb_d.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	200 galaxy.tools.data WARNING 2022-02-16 16:20:21,576 [pN:main,p:2610618,tN:MainThread] Cannot find index file 'bwa_index.loc' for tool data table 'bwa_indexes'
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	201 galaxy.tools.data WARNING 2022-02-16 16:20:21,576 [pN:main,p:2610618,tN:MainThread] Cannot find index file 'bwa_index_color.loc' for tool data table 'bwa_indexes_color'
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	202 galaxy.tools.data INFO 2022-02-16 16:20:21,576 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/maf_index.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	203 galaxy.tools.data INFO 2022-02-16 16:20:21,577 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/ngs_sim_fasta.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	204 galaxy.tools.data INFO 2022-02-16 16:20:21,577 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/perm_base_index.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	205 galaxy.tools.data INFO 2022-02-16 16:20:21,578 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/perm_color_index.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	206 galaxy.tools.data INFO 2022-02-16 16:20:21,578 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/picard_index.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	207 galaxy.tools.data INFO 2022-02-16 16:20:21,578 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/picard_index.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	208 galaxy.tools.data INFO 2022-02-16 16:20:21,578 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/mosaik_index.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	209 galaxy.tools.data INFO 2022-02-16 16:20:21,579 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/twobit.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	210 galaxy.tools.data WARNING 2022-02-16 16:20:21,687 [pN:main,p:2610618,tN:MainThread] Line 1 in tool data table 'igv_broad_genomes' is invalid (HINT: '<TAB>' characters must be used to separate fields):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	211 <Server-Side Genome List>
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	212 galaxy.tools.data INFO 2022-02-16 16:20:21,688 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/liftOver.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	213 galaxy.tools.data INFO 2022-02-16 16:20:21,689 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/bam_iobio.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	214 galaxy.tools.data INFO 2022-02-16 16:20:21,689 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/vcf_iobio.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	215 galaxy.tools.data INFO 2022-02-16 16:20:21,690 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/biom_simple_display.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	216 galaxy.tools.data INFO 2022-02-16 16:20:21,690 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/intermine_simple_display.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	217 galaxy.tools.data INFO 2022-02-16 16:20:21,691 [pN:main,p:2610618,tN:MainThread] Could not find tool data /tmp/tmppmuqm8bo/galaxy-dev/tool-data/icn3d_simple_display.loc, reading sample
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	218 galaxy.util WARNING 2022-02-16 16:20:21,838 [pN:main,p:2610618,tN:MainThread] directory not found: /tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/util/../../../config/plugins/activities
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	219 galaxy.tools WARNING 2022-02-16 16:20:21,838 [pN:main,p:2610618,tN:MainThread] The default shed tool config file (/tmp/tmppmuqm8bo/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	220 galaxy.tool_util.toolbox.base INFO 2022-02-16 16:20:21,838 [pN:main,p:2610618,tN:MainThread] Parsing the tool configuration /tmp/tmppmuqm8bo/tool_conf.xml
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	221 galaxy.tools WARNING 2022-02-16 16:20:21,855 [pN:main,p:2610618,tN:MainThread] Tool with id 'dunovo': a when tag has not been defined for 'out_format (type) --> fasta', assuming empty inputs.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	222 galaxy.util ERROR 2022-02-16 16:20:21,856 [pN:main,p:2610618,tN:MainThread] Error parsing file /home/me/annex/Work/PSU/Nekrutenko/code/duplex/galaxy/correct_barcodes.xml
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	223 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	224 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/util/__init__.py", line 255, in parse_xml
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	225 tree = etree.parse(fname, parser=parser)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	226 File "src/lxml/etree.pyx", line 3521, in lxml.etree.parse
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	227 File "src/lxml/parser.pxi", line 1859, in lxml.etree._parseDocument
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	228 File "src/lxml/parser.pxi", line 1885, in lxml.etree._parseDocumentFromURL
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	229 File "src/lxml/parser.pxi", line 1789, in lxml.etree._parseDocFromFile
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	230 File "src/lxml/parser.pxi", line 1177, in lxml.etree._BaseParser._parseDocFromFile
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	231 File "src/lxml/parser.pxi", line 615, in lxml.etree._ParserContext._handleParseResultDoc
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	232 File "src/lxml/parser.pxi", line 725, in lxml.etree._handleParseResult
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	233 File "src/lxml/parser.pxi", line 654, in lxml.etree._raiseParseError
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	234 File "/home/me/annex/Work/PSU/Nekrutenko/code/duplex/galaxy/correct_barcodes.xml", line 27
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	235 lxml.etree.XMLSyntaxError: Attribute label redefined, line 27, column 336
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	236 galaxy.tool_util.toolbox.base ERROR 2022-02-16 16:20:21,857 [pN:main,p:2610618,tN:MainThread] Failed to load potential tool /home/me/annex/Work/PSU/Nekrutenko/code/duplex/galaxy/correct_barcodes.xml.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	237 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	238 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/tool_util/toolbox/base.py", line 902, in quick_load
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	239 tool = self.load_tool(tool_file, tool_cache_data_dir)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	240 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/tool_util/toolbox/base.py", line 942, in load_tool
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	241 tool = self.create_tool(config_file=config_file, tool_shed_repository=tool_shed_repository, guid=guid, tool_cache_data_dir=tool_cache_data_dir, **kwds)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	242 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/tools/__init__.py", line 374, in create_tool
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	243 tool_source = self.get_expanded_tool_source(config_file)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	244 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/tools/__init__.py", line 391, in get_expanded_tool_source
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	245 raise e
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	246 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/tools/__init__.py", line 382, in get_expanded_tool_source
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	247 return get_tool_source(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	248 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/tool_util/parser/factory.py", line 44, in get_tool_source
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	249 tree, macro_paths = load_tool_with_refereces(config_file)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	250 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/util/xml_macros.py", line 15, in load_with_references
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	251 tree = raw_xml_tree(path)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	252 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/util/xml_macros.py", line 56, in raw_xml_tree
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	253 tree = parse_xml(path, strip_whitespace=False, remove_comments=True)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	254 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/util/__init__.py", line 255, in parse_xml
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	255 tree = etree.parse(fname, parser=parser)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	256 File "src/lxml/etree.pyx", line 3521, in lxml.etree.parse
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	257 File "src/lxml/parser.pxi", line 1859, in lxml.etree._parseDocument
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	258 File "src/lxml/parser.pxi", line 1885, in lxml.etree._parseDocumentFromURL
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	259 File "src/lxml/parser.pxi", line 1789, in lxml.etree._parseDocFromFile
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	260 File "src/lxml/parser.pxi", line 1177, in lxml.etree._BaseParser._parseDocFromFile
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	261 File "src/lxml/parser.pxi", line 615, in lxml.etree._ParserContext._handleParseResultDoc
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	262 File "src/lxml/parser.pxi", line 725, in lxml.etree._handleParseResult
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	263 File "src/lxml/parser.pxi", line 654, in lxml.etree._raiseParseError
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	264 File "/home/me/annex/Work/PSU/Nekrutenko/code/duplex/galaxy/correct_barcodes.xml", line 27
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	265 lxml.etree.XMLSyntaxError: Attribute label redefined, line 27, column 336
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	266 galaxy.tools WARNING 2022-02-16 16:20:21,862 [pN:main,p:2610618,tN:MainThread] The default shed tool config file (/tmp/tmppmuqm8bo/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	267 galaxy.tool_util.toolbox.base INFO 2022-02-16 16:20:21,863 [pN:main,p:2610618,tN:MainThread] Parsing the tool configuration /tmp/tmppmuqm8bo/shed_tools_conf.xml
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	268 galaxy.tools WARNING 2022-02-16 16:20:21,863 [pN:main,p:2610618,tN:MainThread] The default shed tool config file (/tmp/tmppmuqm8bo/shed_tool_conf.xml) has been added to the tool_config_file option, if this is not the desired behavior, please set shed_tool_config_file to your primary shed-enabled tool config file
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	269 galaxy.tool_util.toolbox.base INFO 2022-02-16 16:20:21,863 [pN:main,p:2610618,tN:MainThread] Parsing the tool configuration /tmp/tmppmuqm8bo/empty_tool_conf.xml
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	270 galaxy.datatypes.display_applications.application ERROR 2022-02-16 16:20:21,979 [pN:main,p:2610618,tN:MainThread] Error loading a set of Dynamic Display Application links: A format or a metadata can be defined for a DisplayApplicationParameter, but not both.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	271 galaxy.datatypes.display_applications.application ERROR 2022-02-16 16:20:21,981 [pN:main,p:2610618,tN:MainThread] Error loading a set of Dynamic Display Application links: A format or a metadata can be defined for a DisplayApplicationParameter, but not both.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	272 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,280 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: aequatus
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	273 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,282 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: annotate_image
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	274 galaxy.visualization.plugins.config_parser INFO 2022-02-16 16:20:22,283 [pN:main,p:2610618,tN:MainThread] template syntax is deprecated: use entry_point instead
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	275 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,283 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: chiraviz
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	276 galaxy.visualization.plugins.config_parser INFO 2022-02-16 16:20:22,284 [pN:main,p:2610618,tN:MainThread] Visualizations plugin disabled: Circster. Skipping...
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	277 galaxy.visualization.plugins.config_parser INFO 2022-02-16 16:20:22,285 [pN:main,p:2610618,tN:MainThread] template syntax is deprecated: use entry_point instead
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	278 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,285 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: csg
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	279 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,286 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: cytoscape
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	280 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,287 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: drawrna
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	281 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,287 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: editor
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	282 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,288 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: example
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	283 galaxy.visualization.plugins.config_parser INFO 2022-02-16 16:20:22,289 [pN:main,p:2610618,tN:MainThread] template syntax is deprecated: use entry_point instead
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	284 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,289 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: graphviz
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	285 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,293 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_cluster
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	286 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,296 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: heatmap_default
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	287 galaxy.visualization.plugins.config_parser INFO 2022-02-16 16:20:22,296 [pN:main,p:2610618,tN:MainThread] template syntax is deprecated: use entry_point instead
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	288 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,296 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: hivtrace
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	289 galaxy.visualization.plugins.config_parser INFO 2022-02-16 16:20:22,297 [pN:main,p:2610618,tN:MainThread] template syntax is deprecated: use entry_point instead
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	290 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,297 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: hyphyvision
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	291 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,301 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_bar
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	292 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,304 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_box
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	293 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,306 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_histogram
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	294 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,308 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_line
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	295 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,310 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: jqplot_scatter
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	296 galaxy.visualization.plugins.config_parser INFO 2022-02-16 16:20:22,311 [pN:main,p:2610618,tN:MainThread] template syntax is deprecated: use entry_point instead
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	297 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,311 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: audio_player
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	298 galaxy.visualization.plugins.config_parser INFO 2022-02-16 16:20:22,312 [pN:main,p:2610618,tN:MainThread] template syntax is deprecated: use entry_point instead
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	299 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,312 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: video_player
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	300 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,312 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: msa
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	301 galaxy.visualization.plugins.config_parser INFO 2022-02-16 16:20:22,312 [pN:main,p:2610618,tN:MainThread] template syntax is deprecated: use entry_point instead
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	302 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,313 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: mvpapp
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	303 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,315 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: ngl
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	304 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,316 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nora
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	305 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,320 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	306 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,322 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_bar_stacked
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	307 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,323 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	308 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,325 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_histogram_discrete
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	309 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,329 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	310 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,333 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_horizontal_stacked
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	311 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,337 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	312 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,341 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_line_focus
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	313 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,344 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_pie
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	314 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,348 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_scatter
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	315 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,353 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	316 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,357 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_full
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	317 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,362 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: nvd3_stackedarea_stream
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	318 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,363 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: openlayers
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	319 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,367 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: openseadragon
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	320 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,369 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: phylocanvas
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	321 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,370 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: phyloviz
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	322 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,371 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: pv
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	323 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,373 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: scatterplot
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	324 galaxy.visualization.plugins.config_parser INFO 2022-02-16 16:20:22,373 [pN:main,p:2610618,tN:MainThread] Visualizations plugin disabled: Sweepster. Skipping...
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	325 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,374 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: trackster
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	326 galaxy.visualization.plugins.config_parser INFO 2022-02-16 16:20:22,374 [pN:main,p:2610618,tN:MainThread] template syntax is deprecated: use entry_point instead
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	327 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,374 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: unipept
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	328 galaxy.visualization.plugins.registry INFO 2022-02-16 16:20:22,375 [pN:main,p:2610618,tN:MainThread] VisualizationsRegistry, loaded plugin: venn
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	329 galaxy.tours._impl INFO 2022-02-16 16:20:22,413 [pN:main,p:2610618,tN:MainThread] Loaded tour 'core.galaxy_ui'
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	330 galaxy.tours._impl INFO 2022-02-16 16:20:22,427 [pN:main,p:2610618,tN:MainThread] Loaded tour 'core.scratchbook'
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	331 galaxy.tours._impl INFO 2022-02-16 16:20:22,446 [pN:main,p:2610618,tN:MainThread] Loaded tour 'core.history'
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	332 galaxy.jobs INFO 2022-02-16 16:20:22,455 [pN:main,p:2610618,tN:MainThread] Handler 'main' will load all configured runner plugins
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	333 galaxy.jobs.handler INFO 2022-02-16 16:20:22,463 [pN:main,p:2610618,tN:MainThread] job handler stop queue started
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	334 galaxy.jobs.handler INFO 2022-02-16 16:20:22,479 [pN:main,p:2610618,tN:JobHandlerQueue.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main', tag(s): _default_
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	335 galaxy.jobs.handler INFO 2022-02-16 16:20:22,479 [pN:main,p:2610618,tN:MainThread] job handler queue started
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	336 galaxy.jobs.handler INFO 2022-02-16 16:20:22,481 [pN:main,p:2610618,tN:MainThread] job handler stop queue started
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	337 /tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/jobs/handler.py:359: SAWarning: Coercing Subquery object into a select() for use in IN(); please pass a select() construct explicitly
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	338 ~model.Job.table.c.id.in_(hda_not_ready),
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	339 /tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/jobs/handler.py:360: SAWarning: Coercing Subquery object into a select() for use in IN(); please pass a select() construct explicitly
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	340 ~model.Job.table.c.id.in_(ldda_not_ready))
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	341 galaxy.workflow.scheduling_manager INFO 2022-02-16 16:20:22,506 [pN:main,p:2610618,tN:MainThread] No workflow schedulers plugin config file defined, using default scheduler.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	342 galaxy.web_stack.handlers INFO 2022-02-16 16:20:22,506 [pN:main,p:2610618,tN:MainThread] WorkflowSchedulingManager: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	343 galaxy.jobs.handler INFO 2022-02-16 16:20:22,507 [pN:main,p:2610618,tN:WorkflowRequestMonitor.monitor_thread] Handler job grabber initialized with 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED' assignment method for handler 'main', tag(s): None, _default_
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	344 galaxy.queue_worker INFO 2022-02-16 16:20:22,510 [pN:main,p:2610618,tN:MainThread] Binding and starting galaxy control worker for main
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	345 galaxy.queue_worker INFO 2022-02-16 16:20:22,526 [pN:main,p:2610618,tN:MainThread] Queuing async task rebuild_toolbox_search_index for main.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	346 galaxy.app INFO 2022-02-16 16:20:22,673 [pN:main,p:2610618,tN:MainThread] Galaxy app startup finished (3269.979 ms)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	347 galaxy.queue_worker INFO 2022-02-16 16:20:22,718 [pN:main,p:2610618,tN:Thread-1] Instance 'main' received 'rebuild_toolbox_search_index' task, executing now.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	348 /tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/jobs/handler.py:359: SAWarning: Coercing Subquery object into a select() for use in IN(); please pass a select() construct explicitly
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	349 ~model.Job.table.c.id.in_(hda_not_ready),
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	350 /tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/jobs/handler.py:360: SAWarning: Coercing Subquery object into a select() for use in IN(); please pass a select() construct explicitly
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	351 ~model.Job.table.c.id.in_(ldda_not_ready))
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	352 galaxy.web_stack INFO 2022-02-16 16:20:24,422 [pN:main,p:2610618,tN:MainThread] Galaxy server instance 'main' is running
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	353 /tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/webapps/base/webapp.py:607: SAWarning: Dialect sqlite+pysqlite does not support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	354 user = self.sa_session.query(self.app.model.User).filter(self.app.model.User.table.c.email == remote_user_email).first()
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	355 /tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/webapps/base/webapp.py:243: SAWarning: Dialect sqlite+pysqlite does not support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	356 if config.use_remote_user and self.galaxy_session.user.deleted:
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	357 127.0.0.1 - - [16/Feb/2022:16:20:24 -0400] "HEAD / HTTP/1.1" 200 - "-" "curl/7.68.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	358 127.0.0.1 - - [16/Feb/2022:16:21:25 -0400] "GET / HTTP/1.1" 200 - "http://localhost:9090/admin/toolbox_dependencies" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:97.0) Gecko/20100101 Firefox/97.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	359 127.0.0.1 - - [16/Feb/2022:16:21:26 -0400] "GET /api/webhooks HTTP/1.1" 200 - "http://localhost:9090/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:97.0) Gecko/20100101 Firefox/97.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	360 127.0.0.1 - - [16/Feb/2022:16:21:26 -0400] "GET /api/webhooks HTTP/1.1" 200 - "http://localhost:9090/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:97.0) Gecko/20100101 Firefox/97.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	361 127.0.0.1 - - [16/Feb/2022:16:21:26 -0400] "GET /api/webhooks HTTP/1.1" 200 - "http://localhost:9090/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:97.0) Gecko/20100101 Firefox/97.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	362 /tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/model/__init__.py:2669: SAWarning: Dialect sqlite+pysqlite does not support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	363 rval = db_session.query(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	364 127.0.0.1 - - [16/Feb/2022:16:21:26 -0400] "GET /history/current_history_json HTTP/1.1" 200 - "http://localhost:9090/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:97.0) Gecko/20100101 Firefox/97.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	365 127.0.0.1 - - [16/Feb/2022:16:21:26 -0400] "GET /welcome HTTP/1.1" 302 265 "http://localhost:9090/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:97.0) Gecko/20100101 Firefox/97.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	366 127.0.0.1 - - [16/Feb/2022:16:21:26 -0400] "GET /api/configuration HTTP/1.1" 200 - "http://localhost:9090/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:97.0) Gecko/20100101 Firefox/97.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	367 127.0.0.1 - - [16/Feb/2022:16:21:26 -0400] "GET /api/tools?in_panel=true&view=default HTTP/1.1" 200 - "http://localhost:9090/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:97.0) Gecko/20100101 Firefox/97.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	368 127.0.0.1 - - [16/Feb/2022:16:21:26 -0400] "GET /api/users/2891970512fa2d5a HTTP/1.1" 200 - "http://localhost:9090/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:97.0) Gecko/20100101 Firefox/97.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	369 127.0.0.1 - - [16/Feb/2022:16:21:26 -0400] "GET /api/histories/2891970512fa2d5a/contents?limit=500&offset=0&details=54f2a3a23292eb07%2Ca90a30fafe298e1e%2Cb54fb481e575bccc%2C27ee89e2e3d631e0&order=hid&v=dev&q=deleted&q=purged&q=visible&qv=False&qv=False&qv=True HTTP/1.1" 200 - "http://localhost:9090/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:97.0) Gecko/20100101 Firefox/97.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	370 127.0.0.1 - - [16/Feb/2022:16:21:27 -0400] "GET /history/set_as_current?id=2891970512fa2d5a HTTP/1.1" 200 - "http://localhost:9090/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:97.0) Gecko/20100101 Firefox/97.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	371 127.0.0.1 - - [16/Feb/2022:16:21:27 -0400] "GET /api/histories/2891970512fa2d5a?keys=size%2Cnon_ready_jobs%2Ccontents_active%2Chid_counter HTTP/1.1" 200 - "http://localhost:9090/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:97.0) Gecko/20100101 Firefox/97.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	372 /tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/managers/histories.py:570: SAWarning: Dialect sqlite+pysqlite does not support Decimal objects natively, and SQLAlchemy must convert from floating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	373 for hda in history.datasets:
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	374 127.0.0.1 - - [16/Feb/2022:16:21:27 -0400] "GET /api/histories/2891970512fa2d5a?view=betawebclient HTTP/1.1" 200 - "http://localhost:9090/" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:97.0) Gecko/20100101 Firefox/97.0"
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	375 [2022-02-16 16:21:34 -0500] [2610616] [INFO] Handling signal: int
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	376 [2022-02-16 16:21:34 -0500] [2610618] [INFO] Worker exiting (pid: 2610618)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	377 galaxy.jobs.handler ERROR 2022-02-16 16:21:34,396 [pN:main,p:2610618,tN:JobHandlerQueue.monitor_thread] Exception in monitor_step
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	378 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	379 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1770, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	380 self.dialect.do_execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	381 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 717, in do_execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	382 cursor.execute(statement, parameters)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	383 sqlite3.OperationalError: no such table: job
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	384
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	385 The above exception was the direct cause of the following exception:
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	386
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	387 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	388 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/jobs/handler.py", line 307, in __monitor
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	389 self.__monitor_step()
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	390 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/jobs/handler.py", line 325, in __monitor_step
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	391 self.__handle_waiting_jobs()
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	392 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/jobs/handler.py", line 373, in __handle_waiting_jobs
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	393 jobs_to_check = ready_query.all()
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	394 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 2709, in all
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	395 return self._iter().all()
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	396 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 2844, in _iter
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	397 result = self.session.execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	398 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/session.py", line 1689, in execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	399 result = conn._execute_20(statement, params or {}, execution_options)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	400 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1582, in _execute_20
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	401 return meth(self, args_10style, kwargs_10style, execution_options)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	402 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/sql/elements.py", line 323, in _execute_on_connection
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	403 return connection._execute_clauseelement(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	404 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1451, in _execute_clauseelement
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	405 ret = self._execute_context(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	406 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1813, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	407 self._handle_dbapi_exception(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	408 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1994, in _handle_dbapi_exception
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	409 util.raise_(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	410 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/util/compat.py", line 207, in raise_
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	411 raise exception
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	412 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1770, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	413 self.dialect.do_execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	414 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 717, in do_execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	415 cursor.execute(statement, parameters)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	416 sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) no such table: job
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	417 [SQL: SELECT job.id AS job_id, job.create_time AS job_create_time, job.update_time AS job_update_time, job.history_id AS job_history_id, job.library_folder_id AS job_library_folder_id, job.tool_id AS job_tool_id, job.tool_version AS job_tool_version, job.galaxy_version AS job_galaxy_version, job.dynamic_tool_id AS job_dynamic_tool_id, job.state AS job_state, job.info AS job_info, job.copied_from_job_id AS job_copied_from_job_id, job.command_line AS job_command_line, job.dependencies AS job_dependencies, job.job_messages AS job_job_messages, job.param_filename AS job_param_filename, job.runner_name AS job_runner_name_1, job.job_stdout AS job_job_stdout, job.job_stderr AS job_job_stderr, job.tool_stdout AS job_tool_stdout, job.tool_stderr AS job_tool_stderr, job.exit_code AS job_exit_code, job.traceback AS job_traceback, job.session_id AS job_session_id, job.user_id AS job_user_id, job.job_runner_name AS job_job_runner_name, job.job_runner_external_id AS job_job_runner_external_id, job.destination_id AS job_destination_id, job.destination_params AS job_destination_params, job.object_store_id AS job_object_store_id, job.imported AS job_imported, job.params AS job_params, job.handler AS job_handler, EXISTS (SELECT history_dataset_collection_association.id
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	418 FROM history_dataset_collection_association, job_to_output_dataset_collection
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	419 WHERE job.id = job_to_output_dataset_collection.job_id AND history_dataset_collection_association.id = job_to_output_dataset_collection.dataset_collection_id AND history_dataset_collection_association.deleted = 1) AS anon_1, EXISTS (SELECT history_dataset_association.id, history_dataset_association.history_id, history_dataset_association.dataset_id, history_dataset_association.create_time, history_dataset_association.update_time, history_dataset_association.state, history_dataset_association.copied_from_history_dataset_association_id, history_dataset_association.copied_from_library_dataset_dataset_association_id, history_dataset_association.name, history_dataset_association.info, history_dataset_association.blurb, history_dataset_association.peek, history_dataset_association.tool_version, history_dataset_association.extension, history_dataset_association.metadata, history_dataset_association.parent_id, history_dataset_association.designation, history_dataset_association.deleted, history_dataset_association.visible, history_dataset_association.extended_metadata_id, history_dataset_association.version, history_dataset_association.hid, history_dataset_association.purged, history_dataset_association.validated_state, history_dataset_association.validated_state_message, history_dataset_association.hidden_beneath_collection_instance_id
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	420 FROM history_dataset_association, job_to_output_dataset
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	421 WHERE job.id = job_to_output_dataset.job_id AND history_dataset_association.id = job_to_output_dataset.dataset_id AND history_dataset_association.deleted = 1) AS anon_2
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	422 FROM job LEFT OUTER JOIN galaxy_user ON galaxy_user.id = job.user_id
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	423 WHERE job.state = ? AND job.handler = ? AND (job.id NOT IN (SELECT anon_3.id
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	424 FROM (SELECT job.id AS id
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	425 FROM job JOIN job_to_input_dataset ON job.id = job_to_input_dataset.job_id JOIN history_dataset_association ON history_dataset_association.id = job_to_input_dataset.dataset_id JOIN dataset ON dataset.id = history_dataset_association.dataset_id
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	426 WHERE job.state = ? AND dataset.state IN (?, ?, ?, ?, ?)) AS anon_3)) AND (job.id NOT IN (SELECT anon_4.id
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	427 FROM (SELECT job.id AS id
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	428 FROM job JOIN job_to_input_library_dataset ON job.id = job_to_input_library_dataset.job_id JOIN library_dataset_dataset_association ON library_dataset_dataset_association.id = job_to_input_library_dataset.ldda_id JOIN dataset ON dataset.id = library_dataset_dataset_association.dataset_id
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	429 WHERE job.state = ? AND dataset.state IN (?, ?, ?, ?, ?)) AS anon_4)) ORDER BY job.id]
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	430 [parameters: (<states.NEW: 'new'>, 'main', <states.NEW: 'new'>, 'new', 'upload', 'queued', 'running', 'setting_metadata', <states.NEW: 'new'>, 'new', 'upload', 'queued', 'running', 'setting_metadata')]
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	431 (Background on this error at: http://sqlalche.me/e/14/e3q8)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	432 kombu.mixins WARNING 2022-02-16 16:21:34,671 [pN:main,p:2610618,tN:Thread-1] Connection to broker lost, trying to re-establish connection...
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	433 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	434 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1770, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	435 self.dialect.do_execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	436 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 717, in do_execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	437 cursor.execute(statement, parameters)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	438 sqlite3.OperationalError: no such table: kombu_queue
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	439
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	440 The above exception was the direct cause of the following exception:
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	441
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	442 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	443 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/kombu/mixins.py", line 172, in run
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	444 for _ in self.consume(limit=None, **kwargs):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	445 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/kombu/mixins.py", line 194, in consume
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	446 conn.drain_events(timeout=safety_interval)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	447 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/kombu/connection.py", line 318, in drain_events
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	448 return self.transport.drain_events(self.connection, **kwargs)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	449 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/kombu/transport/virtual/base.py", line 960, in drain_events
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	450 get(self._deliver, timeout=timeout)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	451 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/kombu/utils/scheduling.py", line 52, in get
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	452 return self.fun(resource, callback, **kwargs)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	453 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/kombu/transport/virtual/base.py", line 998, in _drain_channel
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	454 return channel.drain_events(callback=callback, timeout=timeout)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	455 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/kombu/transport/virtual/base.py", line 742, in drain_events
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	456 return self._poll(self.cycle, callback, timeout=timeout)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	457 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/kombu/transport/virtual/base.py", line 399, in _poll
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	458 return cycle.get(callback)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	459 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/kombu/utils/scheduling.py", line 52, in get
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	460 return self.fun(resource, callback, **kwargs)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	461 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/kombu/transport/virtual/base.py", line 402, in _get_and_deliver
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	462 message = self._get(queue)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	463 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/kombu/transport/sqlalchemy/__init__.py", line 112, in _get
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	464 obj = self._get_or_create(queue)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	465 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/kombu/transport/sqlalchemy/__init__.py", line 79, in _get_or_create
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	466 obj = self.session.query(self.queue_cls) \
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	467 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 2760, in first
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	468 return self.limit(1)._iter().first()
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	469 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 2844, in _iter
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	470 result = self.session.execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	471 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/session.py", line 1689, in execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	472 result = conn._execute_20(statement, params or {}, execution_options)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	473 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1582, in _execute_20
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	474 return meth(self, args_10style, kwargs_10style, execution_options)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	475 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/sql/elements.py", line 323, in _execute_on_connection
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	476 return connection._execute_clauseelement(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	477 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1451, in _execute_clauseelement
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	478 ret = self._execute_context(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	479 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1813, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	480 self._handle_dbapi_exception(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	481 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1994, in _handle_dbapi_exception
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	482 util.raise_(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	483 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/util/compat.py", line 207, in raise_
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	484 raise exception
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	485 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1770, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	486 self.dialect.do_execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	487 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 717, in do_execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	488 cursor.execute(statement, parameters)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	489 sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) no such table: kombu_queue
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	490 [SQL: SELECT kombu_queue.id AS kombu_queue_id, kombu_queue.name AS kombu_queue_name
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	491 FROM kombu_queue
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	492 WHERE kombu_queue.name = ?
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	493 LIMIT ? OFFSET ?]
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	494 [parameters: ('control.main@aziz', 1, 0)]
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	495 (Background on this error at: http://sqlalche.me/e/14/e3q8)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	496 galaxy.app ERROR 2022-02-16 16:21:34,675 [pN:main,p:2610618,tN:MainThread] Failed to shutdown database heartbeat cleanly
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	497 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	498 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1770, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	499 self.dialect.do_execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	500 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 717, in do_execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	501 cursor.execute(statement, parameters)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	502 sqlite3.OperationalError: no such table: worker_process
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	503
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	504 The above exception was the direct cause of the following exception:
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	505
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	506 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	507 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/app.py", line 92, in shutdown
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	508 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/app.py", line 397, in _shutdown_database_heartbeat
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	509 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/model/database_heartbeat.py", line 48, in shutdown
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	510 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/model/database_heartbeat.py", line 77, in worker_process
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	511 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 2760, in first
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	512 return self.limit(1)._iter().first()
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	513 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 2844, in _iter
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	514 result = self.session.execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	515 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/session.py", line 1689, in execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	516 result = conn._execute_20(statement, params or {}, execution_options)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	517 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1582, in _execute_20
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	518 return meth(self, args_10style, kwargs_10style, execution_options)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	519 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/sql/elements.py", line 323, in _execute_on_connection
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	520 return connection._execute_clauseelement(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	521 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1451, in _execute_clauseelement
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	522 ret = self._execute_context(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	523 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1813, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	524 self._handle_dbapi_exception(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	525 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1994, in _handle_dbapi_exception
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	526 util.raise_(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	527 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/util/compat.py", line 207, in raise_
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	528 raise exception
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	529 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1770, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	530 self.dialect.do_execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	531 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 717, in do_execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	532 cursor.execute(statement, parameters)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	533 sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) no such table: worker_process
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	534 [SQL: SELECT worker_process.id AS worker_process_id, worker_process.server_name AS worker_process_server_name, worker_process.hostname AS worker_process_hostname, worker_process.pid AS worker_process_pid, worker_process.update_time AS worker_process_update_time
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	535 FROM worker_process
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	536 WHERE worker_process.server_name = ? AND worker_process.hostname = ?
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	537 LIMIT ? OFFSET ?]
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	538 [parameters: ('main', 'aziz', 1, 0)]
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	539 (Background on this error at: http://sqlalche.me/e/14/e3q8)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	540 galaxy.jobs.handler INFO 2022-02-16 16:21:34,676 [pN:main,p:2610618,tN:MainThread] sending stop signal to worker thread
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	541 galaxy.jobs.handler ERROR 2022-02-16 16:21:35,057 [pN:main,p:2610618,tN:JobHandlerStopQueue.monitor_thread] Exception in monitor_step
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	542 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	543 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1770, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	544 self.dialect.do_execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	545 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 717, in do_execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	546 cursor.execute(statement, parameters)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	547 sqlite3.OperationalError: no such table: job
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	548
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	549 The above exception was the direct cause of the following exception:
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	550
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	551 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	552 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/jobs/handler.py", line 927, in monitor
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	553 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/jobs/handler.py", line 958, in monitor_step
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	554 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 2709, in all
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	555 return self._iter().all()
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	556 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 2844, in _iter
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	557 result = self.session.execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	558 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/session.py", line 1689, in execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	559 result = conn._execute_20(statement, params or {}, execution_options)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	560 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1582, in _execute_20
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	561 return meth(self, args_10style, kwargs_10style, execution_options)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	562 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/sql/elements.py", line 323, in _execute_on_connection
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	563 return connection._execute_clauseelement(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	564 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1451, in _execute_clauseelement
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	565 ret = self._execute_context(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	566 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1813, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	567 self._handle_dbapi_exception(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	568 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1994, in _handle_dbapi_exception
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	569 util.raise_(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	570 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/util/compat.py", line 207, in raise_
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	571 raise exception
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	572 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1770, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	573 self.dialect.do_execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	574 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 717, in do_execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	575 cursor.execute(statement, parameters)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	576 sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) no such table: job
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	577 [SQL: SELECT job.id AS job_id, job.create_time AS job_create_time, job.update_time AS job_update_time, job.history_id AS job_history_id, job.library_folder_id AS job_library_folder_id, job.tool_id AS job_tool_id, job.tool_version AS job_tool_version, job.galaxy_version AS job_galaxy_version, job.dynamic_tool_id AS job_dynamic_tool_id, job.state AS job_state, job.info AS job_info, job.copied_from_job_id AS job_copied_from_job_id, job.command_line AS job_command_line, job.dependencies AS job_dependencies, job.job_messages AS job_job_messages, job.param_filename AS job_param_filename, job.runner_name AS job_runner_name_1, job.job_stdout AS job_job_stdout, job.job_stderr AS job_job_stderr, job.tool_stdout AS job_tool_stdout, job.tool_stderr AS job_tool_stderr, job.exit_code AS job_exit_code, job.traceback AS job_traceback, job.session_id AS job_session_id, job.user_id AS job_user_id, job.job_runner_name AS job_job_runner_name, job.job_runner_external_id AS job_job_runner_external_id, job.destination_id AS job_destination_id, job.destination_params AS job_destination_params, job.object_store_id AS job_object_store_id, job.imported AS job_imported, job.params AS job_params, job.handler AS job_handler, EXISTS (SELECT history_dataset_collection_association.id
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	578 FROM history_dataset_collection_association, job_to_output_dataset_collection
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	579 WHERE job.id = job_to_output_dataset_collection.job_id AND history_dataset_collection_association.id = job_to_output_dataset_collection.dataset_collection_id AND history_dataset_collection_association.deleted = 1) AS anon_1, EXISTS (SELECT history_dataset_association.id, history_dataset_association.history_id, history_dataset_association.dataset_id, history_dataset_association.create_time, history_dataset_association.update_time, history_dataset_association.state, history_dataset_association.copied_from_history_dataset_association_id, history_dataset_association.copied_from_library_dataset_dataset_association_id, history_dataset_association.name, history_dataset_association.info, history_dataset_association.blurb, history_dataset_association.peek, history_dataset_association.tool_version, history_dataset_association.extension, history_dataset_association.metadata, history_dataset_association.parent_id, history_dataset_association.designation, history_dataset_association.deleted, history_dataset_association.visible, history_dataset_association.extended_metadata_id, history_dataset_association.version, history_dataset_association.hid, history_dataset_association.purged, history_dataset_association.validated_state, history_dataset_association.validated_state_message, history_dataset_association.hidden_beneath_collection_instance_id
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	580 FROM history_dataset_association, job_to_output_dataset
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	581 WHERE job.id = job_to_output_dataset.job_id AND history_dataset_association.id = job_to_output_dataset.dataset_id AND history_dataset_association.deleted = 1) AS anon_2
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	582 FROM job
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	583 WHERE job.state IN (?, ?, ?) AND job.handler = ?]
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	584 [parameters: (<states.DELETED_NEW: 'deleted_new'>, <states.DELETING: 'deleting'>, <states.STOPPING: 'stop'>, 'main')]
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	585 (Background on this error at: http://sqlalche.me/e/14/e3q8)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	586 galaxy.jobs.handler INFO 2022-02-16 16:21:35,676 [pN:main,p:2610618,tN:MainThread] job handler queue stopped
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	587 galaxy.jobs.runners INFO 2022-02-16 16:21:35,676 [pN:main,p:2610618,tN:MainThread] LocalRunner: Sending stop signal to 4 job worker threads
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	588 galaxy.jobs.runners INFO 2022-02-16 16:21:35,677 [pN:main,p:2610618,tN:MainThread] Waiting up to 30 seconds for job worker threads to shutdown...
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	589 galaxy.jobs.runners INFO 2022-02-16 16:21:35,677 [pN:main,p:2610618,tN:MainThread] All job worker threads shutdown cleanly
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	590 galaxy.jobs.handler INFO 2022-02-16 16:21:35,677 [pN:main,p:2610618,tN:MainThread] sending stop signal to worker thread
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	591 galaxy.jobs.handler INFO 2022-02-16 16:21:35,677 [pN:main,p:2610618,tN:MainThread] job handler stop queue stopped
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	592 Error in atexit._run_exitfuncs:
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	593 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	594 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1770, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	595 self.dialect.do_execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	596 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 717, in do_execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	597 cursor.execute(statement, parameters)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	598 sqlite3.OperationalError: no such table: worker_process
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	599
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	600 The above exception was the direct cause of the following exception:
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	601
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	602 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	603 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/app.py", line 92, in shutdown
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	604 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/app.py", line 397, in _shutdown_database_heartbeat
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	605 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/model/database_heartbeat.py", line 48, in shutdown
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	606 File "/tmp/tmppmuqm8bo/galaxy-dev/lib/galaxy/model/database_heartbeat.py", line 77, in worker_process
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	607 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 2760, in first
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	608 return self.limit(1)._iter().first()
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	609 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/query.py", line 2844, in _iter
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	610 result = self.session.execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	611 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/orm/session.py", line 1689, in execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	612 result = conn._execute_20(statement, params or {}, execution_options)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	613 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1582, in _execute_20
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	614 return meth(self, args_10style, kwargs_10style, execution_options)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	615 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/sql/elements.py", line 323, in _execute_on_connection
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	616 return connection._execute_clauseelement(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	617 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1451, in _execute_clauseelement
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	618 ret = self._execute_context(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	619 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1813, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	620 self._handle_dbapi_exception(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	621 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1994, in _handle_dbapi_exception
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	622 util.raise_(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	623 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/util/compat.py", line 207, in raise_
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	624 raise exception
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	625 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/base.py", line 1770, in _execute_context
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	626 self.dialect.do_execute(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	627 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 717, in do_execute
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	628 cursor.execute(statement, parameters)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	629 sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) no such table: worker_process
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	630 [SQL: SELECT worker_process.id AS worker_process_id, worker_process.server_name AS worker_process_server_name, worker_process.hostname AS worker_process_hostname, worker_process.pid AS worker_process_pid, worker_process.update_time AS worker_process_update_time
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	631 FROM worker_process
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	632 WHERE worker_process.server_name = ? AND worker_process.hostname = ?
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	633 LIMIT ? OFFSET ?]
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	634 [parameters: ('main', 'aziz', 1, 0)]
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	635 (Background on this error at: http://sqlalche.me/e/14/e3q8)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	636 sqlalchemy.pool.impl.NullPool ERROR 2022-02-16 16:21:35,859 [pN:main,p:2610618,tN:MainThread] Exception during reset or similar
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	637 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	638 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/pool/base.py", line 682, in _finalize_fairy
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	639 fairy._reset(pool)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	640 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/pool/base.py", line 887, in _reset
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	641 pool._dialect.do_rollback(self)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	642 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 667, in do_rollback
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	643 dbapi_connection.rollback()
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	644 sqlite3.ProgrammingError: SQLite objects created in a thread can only be used in that same thread. The object was created in thread id 140222822082304 and this is thread id 140224748214080.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	645 sqlalchemy.pool.impl.NullPool ERROR 2022-02-16 16:21:35,860 [pN:main,p:2610618,tN:MainThread] Exception closing connection <sqlite3.Connection object at 0x7f88065f34e0>
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	646 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	647 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/pool/base.py", line 682, in _finalize_fairy
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	648 fairy._reset(pool)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	649 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/pool/base.py", line 887, in _reset
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	650 pool._dialect.do_rollback(self)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	651 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 667, in do_rollback
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	652 dbapi_connection.rollback()
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	653 sqlite3.ProgrammingError: SQLite objects created in a thread can only be used in that same thread. The object was created in thread id 140222822082304 and this is thread id 140224748214080.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	654
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	655 During handling of the above exception, another exception occurred:
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	656
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	657 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	658 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/pool/base.py", line 244, in _close_connection
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	659 self._dialect.do_close(connection)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	660 File "/home/me/.planemo/gx_venv_3/lib/python3.8/site-packages/sqlalchemy/engine/default.py", line 673, in do_close
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	661 dbapi_connection.close()
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	662 sqlite3.ProgrammingError: SQLite objects created in a thread can only be used in that same thread. The object was created in thread id 140222822082304 and this is thread id 140224748214080.
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	663 [2022-02-16 16:21:36 -0500] [2610616] [INFO] Shutting down: Master
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	664 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	665 File "/home/me/.local/lib/python3.8/site-packages/planemo/galaxy/config.py", line 665, in _config_directory
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	666 yield config_directory
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	667 File "/home/me/.local/lib/python3.8/site-packages/planemo/galaxy/config.py", line 540, in local_galaxy_config
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	668 yield LocalGalaxyConfig(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	669 File "/home/me/.local/lib/python3.8/site-packages/planemo/galaxy/config.py", line 237, in galaxy_config
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	670 yield config
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	671 File "/home/me/.local/lib/python3.8/site-packages/planemo/galaxy/serve.py", line 48, in _serve
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	672 exit_code = run_galaxy_command(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	673 File "/home/me/.local/lib/python3.8/site-packages/planemo/galaxy/run.py", line 118, in run_galaxy_command
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	674 exit_code = shell(command, env=env)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	675 File "/home/me/.local/lib/python3.8/site-packages/galaxy/util/commands.py", line 60, in shell
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	676 return p.wait()
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	677 File "/usr/lib/python3.8/subprocess.py", line 1083, in wait
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	678 return self._wait(timeout=timeout)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	679 File "/usr/lib/python3.8/subprocess.py", line 1806, in _wait
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	680 (pid, sts) = self._try_wait(0)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	681 File "/usr/lib/python3.8/subprocess.py", line 1764, in _try_wait
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	682 (pid, sts) = os.waitpid(self.pid, wait_flags)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	683 KeyboardInterrupt
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	684
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	685 During handling of the above exception, another exception occurred:
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	686
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	687 Traceback (most recent call last):
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	688 File "/home/me/.local/bin/planemo", line 8, in <module>
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	689 sys.exit(planemo())
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	690 File "/usr/lib/python3/dist-packages/click/core.py", line 764, in __call__
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	691 return self.main(args, *kwargs)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	692 File "/usr/lib/python3/dist-packages/click/core.py", line 717, in main
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	693 rv = self.invoke(ctx)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	694 File "/usr/lib/python3/dist-packages/click/core.py", line 1137, in invoke
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	695 return _process_result(sub_ctx.command.invoke(sub_ctx))
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	696 File "/usr/lib/python3/dist-packages/click/core.py", line 956, in invoke
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	697 return ctx.invoke(self.callback, **ctx.params)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	698 File "/usr/lib/python3/dist-packages/click/core.py", line 555, in invoke
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	699 return callback(args, *kwargs)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	700 File "/usr/lib/python3/dist-packages/click/decorators.py", line 64, in new_func
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	701 return ctx.invoke(f, obj, args, *kwargs)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	702 File "/usr/lib/python3/dist-packages/click/core.py", line 555, in invoke
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	703 return callback(args, *kwargs)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	704 File "/home/me/.local/lib/python3.8/site-packages/planemo/cli.py", line 98, in handle_blended_options
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	705 return f(args, *kwds)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	706 File "/home/me/.local/lib/python3.8/site-packages/planemo/commands/cmd_serve.py", line 43, in cli
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	707 galaxy_serve(ctx, runnables, **kwds)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	708 File "/home/me/.local/lib/python3.8/site-packages/planemo/galaxy/serve.py", line 25, in serve
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	709 return _serve(ctx, runnables, **kwds)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	710 File "/home/me/.local/lib/python3.8/site-packages/planemo/galaxy/serve.py", line 72, in _serve
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	711 return config
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	712 File "/usr/lib/python3.8/contextlib.py", line 131, in __exit__
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	713 self.gen.throw(type, value, traceback)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	714 File "/home/me/.local/lib/python3.8/site-packages/planemo/galaxy/config.py", line 237, in galaxy_config
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	715 yield config
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	716 File "/usr/lib/python3.8/contextlib.py", line 131, in __exit__
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	717 self.gen.throw(type, value, traceback)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	718 File "/home/me/.local/lib/python3.8/site-packages/planemo/galaxy/config.py", line 540, in local_galaxy_config
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	719 yield LocalGalaxyConfig(
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	720 File "/usr/lib/python3.8/contextlib.py", line 131, in __exit__
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	721 self.gen.throw(type, value, traceback)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	722 File "/home/me/.local/lib/python3.8/site-packages/planemo/galaxy/config.py", line 669, in _config_directory
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	723 shutil.rmtree(config_directory)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	724 File "/usr/lib/python3.8/shutil.py", line 722, in rmtree
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	725 onerror(os.rmdir, path, sys.exc_info())
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	726 File "/usr/lib/python3.8/shutil.py", line 720, in rmtree
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	727 os.rmdir(path)
0f8e0dc73d1d "planemo upload for repository https://github.com/galaxyproject/dunovo commit dbd33f95b486dc556c435f1b42736b818a2b9802-dirty" nick parents: diff changeset	728 OSError: [Errno 39] Directory not empty: '/tmp/tmppmuqm8bo'

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