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annotate tool_dependencies.xml @ 2:a9cb6fb9ea94 draft

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Update to Du Novo 0.7.6.
author nick
date Thu, 24 Aug 2017 02:13:33 -0400
parents ea832c221ec9
children 00dde366870a
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="bowtie2" version="2.2.5">
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4 <repository changeset_revision="30bd7eaeddbf" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="samtools" version="0.1.18">
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7 <repository changeset_revision="1409782220c9" name="package_samtools_0_1_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="mafft" version="7.221">
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10 <repository changeset_revision="15974dd17515" name="mafft" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="networkx" version="1.9">
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13 <repository changeset_revision="83df321ad85e" name="package_networkx_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="dunovo" version="0.7.6">
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16 <install version="1.0">
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17 <actions>
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18 <action sha256sum="d184d192f7b7577826c240ee8f0488046b0b38e032325dcf9aa3f6c730f8ea0d" type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v0.7.6.tar.gz</action>
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19 <action type="shell_command">make</action>
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20 <action type="move_directory_files">
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21 <source_directory>.</source_directory>
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22 <destination_directory>$INSTALL_DIR</destination_directory>
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23 </action>
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24 <action type="set_environment">
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25 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
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26 </action>
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27 <!-- Note: This does not install the submodules.
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28 Functionality they provide will not be available. -->
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29 </actions>
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30 </install>
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31 </package>
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32 </tool_dependency>