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comparison align_families.xml @ 5:000969829a5d draft

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correct.py wrapper fix
author nick
date Fri, 27 Oct 2017 12:50:39 -0400
parents 5fbeaa41b223
children 23f5d9316694
comparison
equal deleted inserted replaced
4:5fbeaa41b223 5:000969829a5d
4 <requirements> 4 <requirements>
5 <requirement type="package" version="7.221">mafft</requirement> 5 <requirement type="package" version="7.221">mafft</requirement>
6 <requirement type="package" version="2.0.6">dunovo</requirement> 6 <requirement type="package" version="2.0.6">dunovo</requirement>
7 <!-- TODO: require Python 2.7 --> 7 <!-- TODO: require Python 2.7 -->
8 </requirements> 8 </requirements>
9 <version_command>align_families.py --version</version_command>
9 <command detect_errors="exit_code">align_families.py --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output' 10 <command detect_errors="exit_code">align_families.py --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
10 </command> 11 </command>
11 <inputs> 12 <inputs>
12 <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/> 13 <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/>
13 <param name="aligner" type="select" value="mafft" label="Multiple sequence aligner" help="MAFFT is the original aligner Du Novo was published with in 2016. Kalign is much faster and has similar accuracy."> 14 <param name="aligner" type="select" value="mafft" label="Multiple sequence aligner" help="MAFFT is the original aligner Du Novo was published with in 2016. Kalign is much faster and has similar accuracy.">