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comparison dunovo.xml @ 5:000969829a5d draft

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correct.py wrapper fix
author nick
date Fri, 27 Oct 2017 12:50:39 -0400
parents 5fbeaa41b223
children 23f5d9316694
comparison
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4:5fbeaa41b223 5:000969829a5d
3 <description>from duplex sequencing alignments</description> 3 <description>from duplex sequencing alignments</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.0.6">dunovo</requirement> 5 <requirement type="package" version="2.0.6">dunovo</requirement>
6 <!-- TODO: require Python 2.7 --> 6 <!-- TODO: require Python 2.7 -->
7 </requirements> 7 </requirements>
8 <version_command>dunovo.py --version</version_command>
8 <command detect_errors="exit_code"> 9 <command detect_errors="exit_code">
9 dunovo.py --galaxy $phone --processes \${GALAXY_SLOTS:-1} --min-reads $min_reads --qual $qual_thres --qual-format $qual_format --cons-thres $cons_thres --min-cons-reads $min_cons_reads '$input' --dcs1 '$dcs1' --dcs2 '$dcs2' 10 dunovo.py --galaxy $phone --processes \${GALAXY_SLOTS:-1} --min-reads $min_reads --qual $qual_thres --qual-format $qual_format --cons-thres $cons_thres --min-cons-reads $min_cons_reads '$input' --dcs1 '$dcs1' --dcs2 '$dcs2'
10 #if $keep_sscs: 11 #if $keep_sscs:
11 --sscs1 '$sscs1' --sscs2 '$sscs2' 12 --sscs1 '$sscs1' --sscs2 '$sscs2'
12 #end if 13 #end if