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comparison make_families.xml @ 5:000969829a5d draft

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correct.py wrapper fix
author nick
date Fri, 27 Oct 2017 12:50:39 -0400
parents 5fbeaa41b223
children 23f5d9316694
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4:5fbeaa41b223 5:000969829a5d
3 <description>of duplex sequencing reads</description> 3 <description>of duplex sequencing reads</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.0.6">dunovo</requirement> 5 <requirement type="package" version="2.0.6">dunovo</requirement>
6 </requirements> 6 </requirements>
7 <!-- TODO: Add dependency on coreutils to get paste? --> 7 <!-- TODO: Add dependency on coreutils to get paste? -->
8 <version_command>dunovo.py --version</version_command>
8 <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output' 9 <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output'
9 </command> 10 </command>
10 <inputs> 11 <inputs>
11 <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/> 12 <param name="fastq1" type="data" format="fastq" label="Sequencing reads, mate 1"/>
12 <param name="fastq2" type="data" format="fastq" label="Sequencing reads, mate 2"/> 13 <param name="fastq2" type="data" format="fastq" label="Sequencing reads, mate 2"/>