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comparison align_families.xml @ 3:00dde366870a draft

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planemo upload for repository https://github.com/galaxyproject/dunovo commit b'a3ad9fbb3f010253808fc0c7329897a741ec9feb\n'
author nick
date Mon, 11 Sep 2017 16:59:44 -0400
parents a9cb6fb9ea94
children 5fbeaa41b223
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2:a9cb6fb9ea94 3:00dde366870a
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="align_families" name="Du Novo: Align families" version="0.7.6"> 2 <tool id="align_families" name="Du Novo: Align families" version="0.8.1">
3 <description>of duplex sequencing reads</description> 3 <description>of duplex sequencing reads</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="7.221">mafft</requirement> 5 <requirement type="package" version="7.221">mafft</requirement>
6 <requirement type="package" version="0.7.6">dunovo</requirement> 6 <requirement type="package" version="0.8.1">dunovo</requirement>
7 <!-- TODO: require Python 2.7 --> 7 <!-- TODO: require Python 2.7 -->
8 </requirements> 8 </requirements>
9 <command detect_errors="exit_code">align_families.py --galaxy $phone -p \${GALAXY_SLOTS:-1} '$input' &gt; '$output' 9 <command detect_errors="exit_code">align_families.py --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output'
10 </command> 10 </command>
11 <inputs> 11 <inputs>
12 <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/> 12 <param name="input" type="data" format="tabular" label="Input reads" help="with barcodes, grouped by family"/>
13 <param name="phone" type="boolean" truevalue="--phone-home" falsevalue="" checked="False" label="Send anonymous usage data" help="Report helpful usage data to the developer, to better understand the use cases and performance of the tool. The only data which will be recorded is the name and version of the tool, the size of the input data, the time taken to process it, and the IP address of the machine running it. No parameters or filenames are sent."/> 13 <param name="phone" type="boolean" truevalue="--phone-home" falsevalue="" checked="False" label="Send anonymous usage data" help="Report helpful usage data to the developer, to better understand the use cases and performance of the tool. The only data which will be recorded is the name and version of the tool, the size of the input data, the time taken to process it, and the IP address of the machine running it. No parameters or filenames are sent."/>
14 </inputs> 14 </inputs>